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解析南极球石藻转录组对铁条件变化的适应和驯化模式

Deciphering Patterns of Adaptation and Acclimation in the Transcriptome of Phaeocystis antarctica to Changing Iron Conditions.

作者信息

Rizkallah Mariam R, Frickenhaus Stephan, Trimborn Scarlett, Harms Lars, Moustafa Ahmed, Benes Vladimir, Gäbler-Schwarz Steffi, Beszteri Sara

机构信息

Jacobs University Bremen, Campus Ring 1, 28759, Bremen, Germany.

Alfred Wegener Institute for Polar and Marine Research, Am Handelshafen 12, 27570, Bremerhaven, Germany.

出版信息

J Phycol. 2020 Jun;56(3):747-760. doi: 10.1111/jpy.12979. Epub 2020 Apr 15.

DOI:10.1111/jpy.12979
PMID:32068264
Abstract

The haptophyte Phaeocystis antarctica is endemic to the Southern Ocean, where iron supply is sporadic and its availability limits primary production. In iron fertilization experiments, P. antarctica showed a prompt and steady increase in cell abundance compared to heavily silicified diatoms along with enhanced colony formation. Here we utilized a transcriptomic approach to investigate molecular responses to alleviation of iron limitation in P. antarctica. We analyzed the transcriptomic response before and after (14 h, 24 h and 72 h) iron addition to a low-iron acclimated culture. After iron addition, we observed indicators of a quick reorganization of cellular energetics, from carbohydrate catabolism and mitochondrial energy production to anabolism. In addition to typical substitution responses from an iron-economic toward an iron-sufficient state for flavodoxin (ferredoxin) and plastocyanin (cytochrome c ), we found other genes utilizing the same strategy involved in nitrogen assimilation and fatty acid desaturation. Our results shed light on a number of adaptive mechanisms that P. antarctica uses under low iron, including the utilization of a Cu-dependent ferric reductase system and indication of mixotrophic growth. The gene expression patterns underpin P. antarctica as a quick responder to iron addition.

摘要

南极定鞭藻是南大洋特有的物种,在那里铁的供应是零星的,其可利用性限制了初级生产力。在铁施肥实验中,与高度硅化的硅藻相比,南极定鞭藻的细胞丰度迅速且稳定地增加,同时群体形成增强。在这里,我们利用转录组学方法研究南极定鞭藻对铁限制缓解的分子反应。我们分析了向低铁驯化培养物中添加铁之前和之后(14小时、24小时和72小时)的转录组反应。添加铁后,我们观察到细胞能量学快速重组的指标,从碳水化合物分解代谢和线粒体能量产生到合成代谢。除了黄素氧还蛋白(铁氧还蛋白)和质体蓝素(细胞色素c)从铁经济状态向铁充足状态的典型替代反应外,我们还发现参与氮同化和脂肪酸去饱和的其他基因采用相同策略。我们的结果揭示了南极定鞭藻在低铁条件下使用的多种适应性机制,包括利用铜依赖性铁还原酶系统和混合营养生长的迹象。基因表达模式支持南极定鞭藻是对铁添加的快速响应者。

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