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新型头孢唑林接种效应相关葡萄球菌β-内酰胺酶分类的新见解。

Novel Insights into the Classification of Staphylococcal β-Lactamases in Relation to the Cefazolin Inoculum Effect.

机构信息

Molecular Genetics and Antimicrobial Resistance Unit, International Center for Microbial Genomics, Universidad El Bosque, Bogota, Colombia.

E.S.E. Hospital Universitario San Jorge de Pereira, Risaralda, Colombia.

出版信息

Antimicrob Agents Chemother. 2020 Apr 21;64(5). doi: 10.1128/AAC.02511-19.

Abstract

Cefazolin has become a prominent therapy for methicillin-susceptible (MSSA) infections. However, an important concern is the cefazolin inoculum effect (CzIE), a phenomenon mediated by staphylococcal β-lactamases. Four variants of staphylococcal β-lactamases have been described based on serological methodologies and limited sequence information. Here, we sought to reassess the classification of staphylococcal β-lactamases and their correlation with the CzIE. We included a large collection of 690 contemporary bloodstream MSSA isolates recovered from Latin America, a region with a high prevalence of the CzIE. We determined cefazolin MICs at standard and high inoculums by broth microdilution. Whole-genome sequencing was performed to classify the β-lactamase in each isolate based on the predicted full sequence of BlaZ. We used the classical schemes for β-lactamase classification and compared it to BlaZ allotypes found in unique sequences using the genomic information. Phylogenetic analyses were performed based on the BlaZ and core-genome sequences. The overall prevalence of the CzIE was 40%. Among 641 genomes, type C was the most predominant β-lactamase (37%), followed by type A (33%). We found 29 allotypes and 43 different substitutions in BlaZ. A single allotype, designated BlaZ-2, showed a robust and statistically significant association with the CzIE. Two other allotypes (BlaZ-3 and BlaZ-5) were associated with a lack of the CzIE. Three amino acid substitutions (A9V, E112A, and G145E) showed statistically significant association with the CzIE ( = <0.01). CC30 was the predominant clone among isolates displaying the CzIE. Thus, we provide a novel approach to the classification of the staphylococcal β-lactamases with the potential to more accurately identify MSSA strains exhibiting the CzIE.

摘要

头孢唑林已成为治疗耐甲氧西林金黄色葡萄球菌(MSSA)感染的重要治疗方法。然而,一个重要的关注点是头孢唑林接种效应(CzIE),这是一种由葡萄球菌β-内酰胺酶介导的现象。根据血清学方法和有限的序列信息,已经描述了四种葡萄球菌β-内酰胺酶变体。在这里,我们试图重新评估葡萄球菌β-内酰胺酶的分类及其与 CzIE 的相关性。我们纳入了拉丁美洲一个地区的大量 690 株当代血流感染 MSSA 分离株,该地区 CzIE 的发生率很高。我们通过肉汤微量稀释法测定了标准和高接种量的头孢唑林 MIC。对每个分离株进行全基因组测序,根据预测的 BlaZ 全长序列对β-内酰胺酶进行分类。我们使用经典的β-内酰胺酶分类方案,并将其与基因组信息中发现的独特序列中的 BlaZ 同种型进行比较。基于 BlaZ 和核心基因组序列进行系统发育分析。CzIE 的总体流行率为 40%。在 641 个基因组中,C 型是最主要的β-内酰胺酶(37%),其次是 A 型(33%)。我们在 BlaZ 中发现了 29 种同种型和 43 种不同的取代。一种单一的同种型,命名为 BlaZ-2,与 CzIE 有很强的统计学显著相关性。另外两种同种型(BlaZ-3 和 BlaZ-5)与缺乏 CzIE 相关。三个氨基酸取代(A9V、E112A 和 G145E)与 CzIE 有统计学显著相关性(=0.01)。在表现出 CzIE 的分离株中,CC30 是主要的克隆。因此,我们提供了一种新的方法来对葡萄球菌β-内酰胺酶进行分类,有可能更准确地识别表现出 CzIE 的 MSSA 菌株。

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