Department of Evolutionary Ecology, National Museum of Natural Sciences (MNCN), Spanish National Research Council (CSIC), Madrid, Spain.
i3S-Instituto de Investigação e Inovação em Saúde, Universidade do Porto, Porto, Portugal.
Mol Ecol Resour. 2020 May;20(3). doi: 10.1111/1755-0998.13152. Epub 2020 Mar 24.
Telomere length has been used as a proxy of fitness, aging and lifespan in vertebrates. In the last decade, dozens of articles reporting on telomere dynamics in the fields of ecology and evolution have been published for a wide range of taxa. With this growing interest, it is necessary to ensure the accuracy and reproducibility of telomere length measurement techniques. Real-time quantitative PCR (qPCR) is routinely applied to measure relative telomere length. However, this technique is highly sensitive to several methodological variables and the optimization of qPCR telomere assays remains highly variable between studies. Therefore, standardized guidelines are required to enable the optimization of robust protocols, and to help in judging the validity of the presented results. This review provides an overview of preanalytical and analytical factors that can lead to qPCR inconsistencies and biases, including: (a) sample type, collection and storage; (b) DNA extraction, storage and quality; (c) qPCR primers, laboratory reagents, and assay conditions; and (d) data analysis. We propose a minimum level of information for publication of qPCR telomere assays in evolutionary ecology considering the methodological pitfalls and sources of error. This review highlights the complexity of the optimization and validation of qPCR for telomere measurement per se, demonstrating the importance of transparency and clarity of reporting methodological details required for reliable, reproducible and comparable qPCR telomere assays. We encourage efforts to implement standardized protocols that ensure the rigour and quality of telomere dynamics studies.
端粒长度一直被用作脊椎动物适应性、衰老和寿命的替代指标。在过去的十年中,已经有数十篇关于生态学和进化领域端粒动态的文章发表,涵盖了广泛的分类群。随着人们对端粒研究兴趣的不断增加,有必要确保端粒长度测量技术的准确性和可重复性。实时定量 PCR(qPCR)通常用于测量相对端粒长度。然而,该技术对多种方法变量高度敏感,qPCR 端粒测定的优化在不同的研究之间差异很大。因此,需要标准化的指南来优化稳健的方案,并帮助判断所呈现结果的有效性。本综述概述了可能导致 qPCR 不一致和偏差的分析前和分析因素,包括:(a)样本类型、采集和储存;(b)DNA 提取、储存和质量;(c)qPCR 引物、实验室试剂和测定条件;以及(d)数据分析。我们考虑到方法上的缺陷和误差源,提出了在进化生态学中发表 qPCR 端粒测定的最低信息要求。本综述强调了优化和验证 qPCR 本身进行端粒测量的复杂性,表明了报告可靠、可重复和可比较的 qPCR 端粒测定所需的方法细节的透明度和清晰度的重要性。我们鼓励努力实施标准化方案,以确保端粒动态研究的严谨性和质量。