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无序-有序转变的物理基础。

Physical basis of the disorder-order transition.

机构信息

Department of Biochemistry and Molecular Biophysics, Center for the Science and Engineering of Living Systems, Washington University in St Louis, St Louis, MO, 63130, USA.

出版信息

Arch Biochem Biophys. 2020 May 30;685:108305. doi: 10.1016/j.abb.2020.108305. Epub 2020 Mar 5.

DOI:10.1016/j.abb.2020.108305
PMID:32145247
Abstract

Intrinsically disordered proteins do not adopt well-defined structures, yet they still play functional roles in many different aspects of biology. Their lack of stable conformations poses new challenges to the quantitative description and understanding of their processes, since they cannot be formulated within the classical terms of structural biology. Polymer physics is emerging as a powerful language to identify, describe, and quantify the molecular determinants of the disordered conformational ensemble. Here, I will review the application of key-concepts of polymer theories to intrinsically disordered proteins, with a particular focus on the role played by residue-residue and residue-solvent interactions in modulating conformational transitions in the disordered structural ensemble.

摘要

无规蛋白不采用明确的结构,但它们在生物学的许多不同方面仍然发挥功能作用。它们缺乏稳定的构象,这给定量描述和理解它们的过程带来了新的挑战,因为它们不能用结构生物学的经典术语来描述。聚合物物理正在成为一种强大的语言,可以识别、描述和量化无规构象的分子决定因素。在这里,我将回顾聚合物理论的关键概念在无规蛋白中的应用,特别关注残基-残基和残基-溶剂相互作用在调节无规结构构象转变中的作用。

相似文献

1
Physical basis of the disorder-order transition.无序-有序转变的物理基础。
Arch Biochem Biophys. 2020 May 30;685:108305. doi: 10.1016/j.abb.2020.108305. Epub 2020 Mar 5.
2
Investigating the Conformational Ensembles of Intrinsically Disordered Proteins with a Simple Physics-Based Model.用基于简单物理的模型研究内在无序蛋白质的构象集合
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3
Modulating charge patterning and ionic strength as a strategy to induce conformational changes in intrinsically disordered proteins.调节电荷图案和离子强度作为诱导无规卷曲蛋白质构象变化的策略。
J Chem Phys. 2018 Aug 28;149(8):085101. doi: 10.1063/1.5037727.
4
Advances in Understanding Stimulus-Responsive Phase Behavior of Intrinsically Disordered Protein Polymers.理解无规蛋白聚合物刺激响应相行为的进展。
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Generation of the configurational ensemble of an intrinsically disordered protein from unbiased molecular dynamics simulation.从无偏分子动力学模拟生成无规卷曲蛋白质的构象集合。
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Criticality in the conformational phase transition among self-similar groups in intrinsically disordered proteins: Probed by salt-bridge dynamics.无序蛋白质中自相似基团构象相变中的关键问题:盐桥动力学探测。
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Salt-bridge dynamics in intrinsically disordered proteins: A trade-off between electrostatic interactions and structural flexibility.无序蛋白质中的盐桥动力学:静电相互作用和结构灵活性之间的权衡。
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Conformational propensities of intrinsically disordered proteins from NMR chemical shifts.基于 NMR 化学位移的无规卷曲蛋白质的构象倾向。
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Ensemble Methods Enable a New Definition for the Solution to Gas-Phase Transfer of Intrinsically Disordered Proteins.集合方法为解决无序蛋白质气相转移问题提供了新的定义。
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Biophys J. 2017 Aug 8;113(3):550-557. doi: 10.1016/j.bpj.2017.06.042.

引用本文的文献

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HYPK: A marginally disordered protein sensitive to charge decoration.HYPK:一种对电荷修饰敏感的边缘无序蛋白。
Proc Natl Acad Sci U S A. 2024 Apr 30;121(18):e2316408121. doi: 10.1073/pnas.2316408121. Epub 2024 Apr 23.
2
Conformational Properties of Polymers at Droplet Interfaces as Model Systems for Disordered Proteins.液滴界面聚合物的构象性质:无序蛋白质的模型体系。
ACS Macro Lett. 2023 Nov 21;12(11):1472-1478. doi: 10.1021/acsmacrolett.3c00456. Epub 2023 Oct 19.
3
Protein nanocondensates: the next frontier.蛋白质纳米凝聚物:下一个前沿领域。
Biophys Rev. 2023 Aug 9;15(4):515-530. doi: 10.1007/s12551-023-01105-1. eCollection 2023 Aug.
4
Intrinsically disordered regions are poised to act as sensors of cellular chemistry.无规则区域倾向于充当细胞化学的传感器。
Trends Biochem Sci. 2023 Dec;48(12):1019-1034. doi: 10.1016/j.tibs.2023.08.001. Epub 2023 Aug 31.
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Conformational Properties of Polymers at Droplet Interfaces as Model Systems for Disordered Proteins.作为无序蛋白质模型系统的聚合物在液滴界面的构象性质
bioRxiv. 2023 Jul 31:2023.07.29.551102. doi: 10.1101/2023.07.29.551102.
6
The Analytical Flory Random Coil Is a Simple-to-Use Reference Model for Unfolded and Disordered Proteins.解析 Flory 无规线团是一种用于展开和无序蛋白质的简单参考模型。
J Phys Chem B. 2023 Jun 1;127(21):4746-4760. doi: 10.1021/acs.jpcb.3c01619. Epub 2023 May 18.
7
The analytical Flory random coil is a simple-to-use reference model for unfolded and disordered proteins.解析型弗洛里无规线团是一种用于未折叠和无序蛋白质的易于使用的参考模型。
bioRxiv. 2023 Mar 13:2023.03.12.531990. doi: 10.1101/2023.03.12.531990.
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The biophysics of disordered proteins from the point of view of single-molecule fluorescence spectroscopy.从单分子荧光光谱学的角度看无序蛋白质的生物物理学。
Essays Biochem. 2022 Dec 16;66(7):875-890. doi: 10.1042/EBC20220065.
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Protein conformation and biomolecular condensates.蛋白质构象与生物分子凝聚物
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Statistical potentials from the Gaussian scaling behaviour of chain fragments buried within protein globules.蛋白质球内链片段的高斯标度行为的统计势。
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