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基因组测序揭示了原角蟾属(无尾目,齿蟾科)中卫星DNA的大量存在。

Great Abundance of Satellite DNA in Proceratophrys (Anura, Odontophrynidae) Revealed by Genome Sequencing.

作者信息

da Silva Marcelo J, Fogarin Destro Raquel, Gazoni Thiago, Narimatsu Hideki, Pereira Dos Santos Paulo S, Haddad Célio F B, Parise-Maltempi Patricia P

出版信息

Cytogenet Genome Res. 2020;160(3):141-147. doi: 10.1159/000506531. Epub 2020 Mar 7.

Abstract

Most eukaryotic genomes contain substantial portions of repetitive DNA sequences. These are located primarily in highly compacted heterochromatin and, in many cases, are one of the most abundant components of the sex chromosomes. In this sense, the anuran Proceratophrys boiei represents an interesting model for analyses on repetitive sequences by means of cytogenetic techniques, since it has a karyotype with large blocks of heterochromatin and a ZZ/ZW sex chromosome system. The present study describes, for the first time, families of satellite DNA (satDNA) in the frog P. boiei. Its genome size was estimated at 1.6 Gb, of which 41% correspond to repetitive sequences, including satDNAs, rDNAs, transposable elements, and other elements characterized as non-repetitive. The satDNAs were mapped by FISH in the centromeric and pericentromeric regions of all chromosomes, suggesting a possible involvement of these sequences in centromere function. SatDNAs are also present in the W sex chromosome, occupying the entire heterochromatic area, indicating a probable contribution of this class of repetitive DNA to the differentiation of the sex chromosomes in this species. This study is a valuable contribution to the existing knowledge on repetitive sequences in amphibians. We show the presence of repetitive DNAs, especially satDNAs, in the genome of P. boiei that might be of relevance in genome organization and regulation, setting the stage for a deeper functional genome analysis of Proceratophrys.

摘要

大多数真核生物基因组包含大量的重复DNA序列。这些序列主要位于高度压缩的异染色质中,并且在许多情况下,是性染色体中最丰富的成分之一。从这个意义上说,无尾目动物博氏原角蟾是通过细胞遗传学技术分析重复序列的一个有趣模型,因为它具有带有大块异染色质的核型和ZZ/ZW性染色体系统。本研究首次描述了博氏原角蟾中的卫星DNA(satDNA)家族。其基因组大小估计为1.6Gb,其中41%对应于重复序列,包括satDNA、rDNA、转座元件以及其他被表征为非重复的元件。通过荧光原位杂交(FISH)将satDNA定位在所有染色体的着丝粒和着丝粒周围区域,表明这些序列可能参与着丝粒功能。satDNA也存在于W性染色体中,占据整个异染色质区域,表明这类重复DNA可能对该物种性染色体的分化有贡献。这项研究对两栖动物重复序列的现有知识做出了有价值的贡献。我们展示了博氏原角蟾基因组中重复DNA的存在,特别是satDNA,它们可能与基因组组织和调控相关,为对原角蟾进行更深入的功能基因组分析奠定了基础。

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