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液滴数字PCR在骨髓增殖性肿瘤等位基因突变负担评估中优于实时定量PCR:一项回顾性研究

Superiority of Droplet Digital PCR Over Real-Time Quantitative PCR for Allele Mutational Burden Assessment in Myeloproliferative Neoplasms: A Retrospective Study.

作者信息

La Rocca Francesco, Grieco Vitina, Ruggieri Vitalba, Zifarone Emanuela, Villani Oreste, Zoppoli Pietro, Russi Sabino, Laurino Simona, Falco Geppino, Calice Giovanni, Marinaccio Anna, Natalicchio Maria Iole, Albano Francesco, Musto Pellegrino

机构信息

Laboratory of Clinical Research and Advanced Diagnostics, IRCCS-CROB, Referral Cancer Center of Basilicata, 85028 Rionero in Vulture (Pz), Italy.

Laboratory of Preclinical and Translational Research, IRCCS-CROB, Referral Cancer Center of Basilicata (CROB); 85028 Rionero in Vulture (Pz), Italy.

出版信息

Diagnostics (Basel). 2020 Mar 5;10(3):143. doi: 10.3390/diagnostics10030143.

Abstract

mutational status is an essential diagnostic index in myeloproliferative neoplasms (MPNs). Although widely used for detection of mutation in peripheral blood (PB), sensitive real-time quantitative PCR (qPCR) presents some methodological limitations. Recently, emerging alternative technologies, like digital droplet PCR (ddPCR), have been reported to overcome some of qPCR's technical drawbacks. The purpose of this study was to compare the diagnostic utility of ddPCR to qPCR for detection and quantification in samples from MPNs patients. Sensitivity and specificity of qPCR and ddPCR in the detection of the mutation were assessed by using a calibrator panel of mutated DNA on 195 positive MPN samples. Based on our results, ddPCR proved to be a suitable, precise, and sensitive method for detection and quantification of the mutation.

摘要

突变状态是骨髓增殖性肿瘤(MPNs)的一项重要诊断指标。尽管外周血(PB)中的突变检测广泛采用灵敏的实时定量PCR(qPCR),但该方法存在一些方法学上的局限性。最近,有报道称新兴的替代技术,如数字液滴PCR(ddPCR),克服了qPCR的一些技术缺点。本研究旨在比较ddPCR与qPCR在MPNs患者样本检测和定量中的诊断效用。通过使用195份MPN阳性样本的突变DNA校准品,评估qPCR和ddPCR检测突变的灵敏度和特异性。根据我们的结果,ddPCR被证明是一种适用于检测和定量该突变的精确且灵敏的方法。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a388/7151190/52db8d0b934f/diagnostics-10-00143-g001.jpg

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