Ustyantsev I G, Tatosyan K A, Stasenko D V, Kochanova N Y, Borodulina O R, Kramerov D A
Engelhardt Institute of Molecular Biology, Russian Academy of Sciences, Moscow, 119991 Russia.
Mol Biol (Mosk). 2020 Jan-Feb;54(1):78-86. doi: 10.31857/S0026898419040165.
Short Interspersed Elements (SINEs) are mobile genetic elements of higher eukaryotes, which originated during evolution from various tRNAs and less often from 5S rRNA and 7SL RNA. Similar to the genes of these RNAs, SINEs are transcribed by RNA polymerase III. The transcripts of some mammalian SINEs have an ability to undergo AAUAAA-dependent polyadenylation, which is unique for the RNA polymerase III transcripts. It is well known that this polyadenylation of many RNA polymerase II transcripts (e.g., mRNAs) increases their lifetime in the cell. The aim of this work is to examine whether the stability of SINE transcripts increases as a result of AAUAAA-dependent polyadenylation. HeLa cells were transfected with SINE DNA, both containing and not containing the polyadenylation signal (AATAAA). One day later, the transcription was inhibited by actinomycin D, and the decrease in the level of the SINE transcripts was monitored by northern hybridization. For all the eight studied SINEs, the half-life of nonpolyadenylated transcripts was 20-30 minutes, and for polyadenylated transcripts, this parameter exceeded 3 hours. Interestingly, the insertion of an additional 80-bp DNA fragment into the middle region of B2 SINE did not significantly reduce the stability of the polyadenylated transcripts. It is most likely that the increase in the lifetime of the polyadenylated SINE transcripts is due to the fact that the poly(A) tail interacts with the poly(A)-binding proteins (PABPs), thus protecting the RNA from degradation by the exonucleases acting from the 3'-end. The results make it possible to design SINE-based vectors intended for the expression of short noncoding RNAs, which are stable in a cell due to polyadenylation.
短散在元件(SINEs)是高等真核生物中的可移动遗传元件,它们在进化过程中起源于各种tRNA,较少起源于5S rRNA和7SL RNA。与这些RNA的基因类似,SINEs由RNA聚合酶III转录。一些哺乳动物SINEs的转录本具有进行AAUAAA依赖的多聚腺苷酸化的能力,这对于RNA聚合酶III转录本来说是独特的。众所周知,许多RNA聚合酶II转录本(如mRNA)的这种多聚腺苷酸化会增加它们在细胞中的寿命。这项工作的目的是研究SINE转录本的稳定性是否由于AAUAAA依赖的多聚腺苷酸化而增加。用含有和不含有多聚腺苷酸化信号(AATAAA)的SINE DNA转染HeLa细胞。一天后,用放线菌素D抑制转录,并通过Northern杂交监测SINE转录本水平的下降。对于所有研究的8种SINEs,未多聚腺苷酸化转录本的半衰期为20 - 30分钟,而多聚腺苷酸化转录本的这一参数超过3小时。有趣的是,在B2 SINE的中间区域插入一个额外的80 bp DNA片段并没有显著降低多聚腺苷酸化转录本的稳定性。很可能多聚腺苷酸化的SINE转录本寿命的增加是由于多聚(A)尾与多聚(A)结合蛋白(PABPs)相互作用,从而保护RNA不被从3'端起作用的外切核酸酶降解。这些结果使得设计用于表达短非编码RNA的基于SINE的载体成为可能,这些载体由于多聚腺苷酸化而在细胞中稳定。