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本文引用的文献

1
Nonequilibrium Energetics of Molecular Motor Kinesin.分子马达肌球蛋白的非平衡能量学。
Phys Rev Lett. 2018 Nov 23;121(21):218101. doi: 10.1103/PhysRevLett.121.218101.
2
Universal glass-forming behavior of in vitro and living cytoplasm.体外和活细胞质的通用玻璃形成行为。
Sci Rep. 2017 Nov 9;7(1):15143. doi: 10.1038/s41598-017-14883-y.
3
Feedback-tracking microrheology in living cells.活细胞中的反馈追踪微流变学。
Sci Adv. 2017 Sep 29;3(9):e1700318. doi: 10.1126/sciadv.1700318. eCollection 2017 Sep.
4
Kinesin rotates unidirectionally and generates torque while walking on microtubules.动力蛋白沿微管单向旋转并产生扭矩。
Proc Natl Acad Sci U S A. 2017 Oct 10;114(41):10894-10899. doi: 10.1073/pnas.1706985114. Epub 2017 Sep 25.
5
Design principles governing chemomechanical coupling of kinesin.驱动蛋白化学机械偶联的设计原则。
Sci Rep. 2017 Apr 25;7(1):1163. doi: 10.1038/s41598-017-01328-9.
6
The Dark Matter of Biology.生物学的暗物质。
Biophys J. 2016 Sep 6;111(5):909-16. doi: 10.1016/j.bpj.2016.07.037.
7
Single molecule FRET observation of kinesin-1's head-tail interaction on microtubule.单分子荧光共振能量转移技术观察驱动蛋白-1在微管上的头尾相互作用
Biophysics (Nagoya-shi). 2013 Nov 7;9:149-59. doi: 10.2142/biophysics.9.149. eCollection 2013.
8
Direct observation of intermediate states during the stepping motion of kinesin-1.在肌球蛋白-1的步进运动过程中中间状态的直接观察。
Nat Chem Biol. 2016 Apr;12(4):290-7. doi: 10.1038/nchembio.2028. Epub 2016 Feb 29.
9
Kinesin's front head is gated by the backward orientation of its neck linker.驱动蛋白的前头部由其颈部连接体的向后取向控制。
Cell Rep. 2015 Mar 31;10(12):1967-73. doi: 10.1016/j.celrep.2015.02.061. Epub 2015 Mar 26.
10
Kinesin processivity is gated by phosphate release.驱动蛋白的持续性由磷酸释放控制。
Proc Natl Acad Sci U S A. 2014 Sep 30;111(39):14136-40. doi: 10.1073/pnas.1410943111. Epub 2014 Sep 2.

波动环境下行走分子马达的实验与理论能量学

Experimental and theoretical energetics of walking molecular motors under fluctuating environments.

作者信息

Ariga Takayuki, Tomishige Michio, Mizuno Daisuke

机构信息

Graduate School of Medicine, Yamaguchi University, Ube, Japan.

Department of Physics and Mathematics, Aoyama Gakuin University, Sagamihara, Japan.

出版信息

Biophys Rev. 2020 Apr;12(2):503-510. doi: 10.1007/s12551-020-00684-7. Epub 2020 Mar 16.

DOI:10.1007/s12551-020-00684-7
PMID:32173796
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7242573/
Abstract

Molecular motors are nonequilibrium open systems that convert chemical energy to mechanical work. Their energetics are essential for various dynamic processes in cells, but largely remain unknown because fluctuations typically arising in small systems prevent investigation of the nonequilibrium behavior of the motors in terms of thermodynamics. Recently, Harada and Sasa proposed a novel equality to measure the dissipation of nonequilibrium small systems. By utilizing this equality, we have investigated the nonequilibrium energetics of the single-molecule walking motor kinesin-1. The dissipation from kinesin movement was measured through the motion of an attached probe particle and its response to external forces, indicating that large hidden dissipation exists. In this short review, aiming to readers who are not familiar with nonequilibrium physics, we briefly introduce the theoretical basis of the dissipation measurement as well as our recent experimental results and mathematical model analysis and discuss the physiological implications of the hidden dissipation in kinesin. In addition, further perspectives on the efficiency of motors are added by considering their actual working environment: living cells.

摘要

分子马达是将化学能转化为机械功的非平衡开放系统。它们的能量学对于细胞中的各种动态过程至关重要,但由于小系统中通常会出现的涨落阻碍了从热力学角度对马达非平衡行为的研究,所以其能量学在很大程度上仍不为人知。最近,原田和笹木提出了一种用于测量非平衡小系统耗散的新等式。利用这个等式,我们研究了单分子行走马达驱动蛋白-1的非平衡能量学。通过附着的探针粒子的运动及其对外力的响应来测量驱动蛋白运动的耗散,这表明存在大量隐藏耗散。在这篇简短的综述中,针对不熟悉非平衡物理学的读者,我们简要介绍了耗散测量的理论基础以及我们最近的实验结果和数学模型分析,并讨论了驱动蛋白中隐藏耗散的生理学意义。此外,通过考虑马达在活细胞这一实际工作环境,还增加了对马达效率的进一步展望。