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3-氧代-β-内酰胺作为磺酰化化学型用于抑制丝氨酸水解酶和基于活性的蛋白质谱分析。

3-Oxo-β-sultam as a Sulfonylating Chemotype for Inhibition of Serine Hydrolases and Activity-Based Protein Profiling.

机构信息

Department of Medicinal Chemistry, Research Institute for Medicines (iMed.ULisboa), Faculdade de Farmacia, Universidade de Lisboa, Av. Prof. Gama Pinto, 1649-003 Lisboa, Portugal.

Biological Chemistry Division, Instituto de Tecnologia Química e Biológica António Xavier, Universidade Nova de Lisboa (ITQB NOVA), Av. da República, 2780-157 Oeiras, Portugal.

出版信息

ACS Chem Biol. 2020 Apr 17;15(4):878-883. doi: 10.1021/acschembio.0c00090. Epub 2020 Mar 20.

Abstract

3-Oxo-β-sultams are four-membered ring ambident electrophiles that can react with nucleophiles either at the carbonyl carbon or at the sulfonyl sulfur atoms, and that have been reported to inhibit serine hydrolases via acylation of the active-site serine residue. We have developed a panel of 3-oxo-β-sultam inhibitors and show, through crystallographic data, that they are regioselective sulfonylating electrophiles, covalently binding to the catalytic serine of human and porcine elastases through the sulfur atom. Application of 3-oxo-β-sultam-derived activity-based probes in a human proteome revealed their potential to label disease-related serine hydrolases and proteasome subunits. Activity-based protein profiling applications of 3-oxo-β-sultams should open up new opportunities to investigate these classes of enzymes in complex proteomes and expand the toolbox of available sulfur-based covalent protein modifiers in chemical biology.

摘要

3-氧代-β-内酰胺是四元环两性亲电试剂,可在羰基碳或磺酰基硫原子处与亲核试剂反应,并且据报道通过酰化活性部位丝氨酸残基来抑制丝氨酸水解酶。我们开发了一组 3-氧代-β-内酰胺抑制剂,并通过晶体学数据表明,它们是区域选择性的磺酰化亲电试剂,通过硫原子共价结合到人源和猪源弹性蛋白酶的催化丝氨酸。在人类蛋白质组中应用 3-氧代-β-内酰胺衍生的基于活性的探针表明,它们有可能标记与疾病相关的丝氨酸水解酶和蛋白酶体亚基。3-氧代-β-内酰胺的基于活性的蛋白质分析应用应该为在复杂蛋白质组中研究这些酶类开辟新的机会,并扩展化学生物学中可用的基于硫的共价蛋白质修饰剂工具箱。

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