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纤维酸类药物遗传学:超越基因组。

Fibrate pharmacogenomics: expanding past the genome.

机构信息

Division of Intramural Research, National Institute of Environmental Health Sciences, NIH, Department of Health & Human Services, Research Triangle Park, NC 27709, USA.

出版信息

Pharmacogenomics. 2020 Mar;21(4):293-306. doi: 10.2217/pgs-2019-0140. Epub 2020 Mar 17.

DOI:10.2217/pgs-2019-0140
PMID:32180510
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7202259/
Abstract

Fibrates are a medication class prescribed for decades as 'broad-spectrum' lipid-modifying agents used to lower blood triglyceride levels and raise high-density lipoprotein cholesterol levels. Such lipid changes are associated with a decrease in cardiovascular disease, and fibrates are commonly used to reduce risk of dangerous cardiovascular outcomes. As with most drugs, it is well established that response to fibrate treatment is variable, and this variation is heritable. This has motivated the investigation of pharmacogenomic determinants of response, and multiple studies have discovered a number of genes associated with fibrate response. Similar to other complex traits, the interrogation of single nucleotide polymorphisms using candidate gene or genome-wide approaches has not revealed a substantial portion of response variation. However, recent innovations in technological platforms and advances in statistical methodologies are revolutionizing the use and integration of other 'omes' in pharmacogenomics studies. Here, we detail successes, challenges, and recent advances in fibrate pharmacogenomics.

摘要

贝特类药物是一种被广泛使用的降脂药物,已被临床应用数十年,用于降低血液中的甘油三酯水平,提高高密度脂蛋白胆固醇水平。这些脂质变化与心血管疾病风险降低有关,贝特类药物常用于降低危险的心血管事件风险。与大多数药物一样,人们早已认识到,贝特类药物的治疗反应存在个体差异,且这种差异具有遗传性。这促使人们研究了药物反应的药物基因组学决定因素,多项研究发现了一些与贝特类药物反应相关的基因。与其他复杂特征一样,使用候选基因或全基因组方法对单核苷酸多态性的检测并未揭示出反应变异的很大一部分。然而,技术平台的最新创新和统计方法学的进步正在彻底改变药物基因组学研究中其他“组学”的使用和整合。在这里,我们详细介绍了贝特类药物药物基因组学的成功、挑战和最新进展。

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本文引用的文献

1
Cardiovascular Risk Reduction with Icosapent Ethyl. Reply.二十碳五烯酸乙酯降低心血管风险。回复。
N Engl J Med. 2019 Apr 25;380(17):1678. doi: 10.1056/NEJMc1902165.
2
Impact of primary carbon sources on microbiome shaping and biotransformation of pharmaceuticals and personal care products.主要碳源对微生物组形成及药物和个人护理品生物转化的影响。
Biodegradation. 2019 Jun;30(2-3):127-145. doi: 10.1007/s10532-019-09871-0. Epub 2019 Feb 28.
3
The NHGRI-EBI GWAS Catalog of published genome-wide association studies, targeted arrays and summary statistics 2019.NHGRI-EBI GWAS Catalog 于 2019 年发布的已发表全基因组关联研究、靶向基因芯片和汇总统计数据
Nucleic Acids Res. 2019 Jan 8;47(D1):D1005-D1012. doi: 10.1093/nar/gky1120.
4
Going to the negative: genomics for optimized medical prescription.走向负向:基因组学在优化医疗处方中的应用。
Nat Rev Genet. 2019 Jan;20(1):1-2. doi: 10.1038/s41576-018-0061-7.
5
Genome-wide linkage scan for loci influencing plasma triglyceride levels.影响血浆甘油三酯水平的基因座的全基因组连锁扫描。
BMC Proc. 2018 Sep 17;12(Suppl 9):52. doi: 10.1186/s12919-018-0137-6. eCollection 2018.
6
Reliability of genomic predictions of complex human phenotypes.复杂人类表型基因组预测的可靠性
BMC Proc. 2018 Sep 17;12(Suppl 9):51. doi: 10.1186/s12919-018-0138-5. eCollection 2018.
7
Identifying fenofibrate responsive CpG sites.识别非诺贝特反应性CpG位点。
BMC Proc. 2018 Sep 17;12(Suppl 9):43. doi: 10.1186/s12919-018-0148-3. eCollection 2018.
8
A Bayesian mixed modeling approach for estimating heritability.一种用于估计遗传力的贝叶斯混合建模方法。
BMC Proc. 2018 Sep 17;12(Suppl 9):31. doi: 10.1186/s12919-018-0131-z. eCollection 2018.
9
Network analysis of drug effect on triglyceride-associated DNA methylation.药物对甘油三酯相关DNA甲基化作用的网络分析
BMC Proc. 2018 Sep 17;12(Suppl 9):27. doi: 10.1186/s12919-018-0130-0. eCollection 2018.
10
Modeling methylation data as an additional genetic variance component.将甲基化数据建模为一个额外的遗传方差分量。
BMC Proc. 2018 Sep 17;12(Suppl 9):29. doi: 10.1186/s12919-018-0128-7. eCollection 2018.