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低拷贝核标记揭示,机会主义杂草(委陵菜属,蔷薇科)中存在复杂的网状进化模式。

Complex patterns of reticulate evolution in opportunistic weeds (Potentilla L., Rosaceae), as revealed by low-copy nuclear markers.

机构信息

Department of Natural History, University Museum, University of Bergen, Postboks 7800, N-5020, Bergen, Norway.

出版信息

BMC Evol Biol. 2020 Mar 18;20(1):38. doi: 10.1186/s12862-020-1597-7.

Abstract

BACKGROUND

Most cinquefoils (Potentilla L., Rosaceae) are polyploids, ranging from tetraploid (4x) to dodecaploid (12x), diploids being a rare exception. Previous studies based on ribosomal and chloroplast data indicated that Norwegian cinquefoil (P. norvegica L.) has genetic material from two separate clades within Potentilla; the Argentea and the Ivesioid clades - and thus a possible history of hybridization and polyploidization (allopolyploidy). In order to trace the putative allopolyploid origin of the species, sequence data from low-copy, biparentally inherited, nuclear markers were used. Specimens covering the circumpolar distribution of P. norvegica and its two subspecies were included, along with the morphologically similar P. intermedia. Potentilla species of low ploidy level known to belong to other relevant clades were also included.

RESULTS

Gene trees based on three low-copy nuclear markers, obtained by Bayesian Inference and Maximum Likelihood analyses, showed slightly different topologies. This is likely due to genomic reorganizations following genome duplication, but the gene trees were not in conflict with a species tree of presumably diploid taxa obtained by Multispecies Coalescent analysis. The results show that both P. norvegica and P. intermedia are allopolyploids with a shared evolutionary history involving at least four parental lineages, three from the Argentea clade and one from the Ivesioid clade.

CONCLUSIONS

This is the first time that reticulate evolution has been proven in the genus Potentilla, and shows the importance of continuing working with low-copy markers in order to properly resolve its evolutionary history. Several hybridization events between the Argentea and Ivesioid clades may have given rise to the species of Wolf's grex Rivales. To better estimate when and where these hybridizations occurred, other Argentea, Ivesioid and Rivales species should be included in future studies.

摘要

背景

大多数委陵菜属植物(委陵菜属,蔷薇科)是多倍体,从四倍体(4x)到十二倍体(12x)不等,二倍体是罕见的例外。基于核糖体和叶绿体数据的先前研究表明,挪威委陵菜(P. norvegica L.)具有来自委陵菜属内两个不同分支的遗传物质;银莲花分支和 Ivesioid 分支 - 因此可能有杂交和多倍体化(异源多倍体)的历史。为了追踪该物种的可能异源多倍体起源,使用了来自低拷贝、双亲遗传的核标记的序列数据。包括了覆盖挪威委陵菜及其两个亚种的环极分布的标本,以及形态上相似的 P. intermedia。还包括了已知属于其他相关分支的低倍体水平的委陵菜属物种。

结果

基于贝叶斯推断和最大似然分析获得的三个低拷贝核标记的基因树显示出略有不同的拓扑结构。这可能是由于基因组复制后发生了基因组重排,但基因树与通过多物种合并分析获得的可能二倍体分类群的物种树并不冲突。结果表明,挪威委陵菜和 P. intermedia 都是异源多倍体,具有共同的进化历史,涉及至少四个亲本谱系,三个来自银莲花分支,一个来自 Ivesioid 分支。

结论

这是首次在委陵菜属中证明了网状进化,并表明继续使用低拷贝标记以正确解析其进化历史的重要性。银莲花分支和 Ivesioid 分支之间的几次杂交事件可能导致了 Wolf's grex Rivales 的物种形成。为了更好地估计这些杂交事件发生的时间和地点,应该在未来的研究中包括其他银莲花分支、Ivesioid 分支和 Rivales 物种。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b8dc/7079425/721a53705e4b/12862_2020_1597_Fig1_HTML.jpg

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