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利用基因组信息进行一种濒危多年生植物的管理规划

Using genomic information for management planning of an endangered perennial, .

作者信息

Lee Kyung Min, Ranta Pertti, Saarikivi Jarmo, Kutnar Lado, Vreš Branko, Dzhus Maxim, Mutanen Marko, Kvist Laura

机构信息

Ecology and Genetics Research Unit University of Oulu Oulu Finland.

Faculty of Biological and Environmental Sciences University of Helsinki Helsinki Finland.

出版信息

Ecol Evol. 2020 Feb 17;10(5):2638-2649. doi: 10.1002/ece3.6093. eCollection 2020 Mar.

Abstract

Species occupying habitats subjected to frequent natural and/or anthropogenic changes are a challenge for conservation management. We studied one such species, , an endangered perennial wetland species typically inhabiting sporadically flooded meadows alongside rivers/lakes. In order to estimate genomic diversity, population structure, and history, we sampled five sites in Finland, three in Estonia, and one each in Slovenia, Belarus, and Poland using genomic SNP data with double-digest restriction site-associated DNA sequencing (ddRAD-seq). We found monophyletic populations, high levels of inbreeding (mean population  = 0.407-0.945), low effective population sizes (  = 0.8-50.9), indications of past demographic expansion, and rare long-distance dispersal. Our results are important in implementing conservation strategies for , which should include founding of seed banks, ex situ cultivations, and reintroductions with individuals of proper origin, combined with continuous population monitoring and habitat management.

摘要

占据频繁遭受自然和/或人为变化栖息地的物种,对保护管理而言是一项挑战。我们研究了这样一个物种,即[物种名称未给出],一种濒危的多年生湿地物种,通常栖息于河流/湖泊沿岸偶尔被洪水淹没的草甸。为了估计基因组多样性、种群结构和历史,我们使用双酶切限制性位点关联DNA测序(ddRAD-seq)的基因组SNP数据,在芬兰的五个地点、爱沙尼亚的三个地点以及斯洛文尼亚、白俄罗斯和波兰各一个地点进行了采样。我们发现了单系种群、高水平的近亲繁殖(平均种群[具体指标未给出]=0.407 - 0.945)、低有效种群大小([具体指标未给出]=0.8 - 50.9)、过去种群扩张的迹象以及罕见的长距离扩散。我们的结果对于实施[物种名称未给出]的保护策略很重要,该策略应包括建立种子库、迁地栽培以及引入来源合适的个体进行重新引入,并结合持续的种群监测和栖息地管理。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2789/7069310/725ed5eab7bb/ECE3-10-2638-g001.jpg

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