Department of Cell and Systems Biology, University of Toronto, 25 Willcocks Street, Toronto, Ontario, Canada, M5S 3B2.
Centre for the Analysis of Genome Evolution and Function, University of Toronto, Toronto, Ontario, Canada, M5S 3B2.
Environ Microbiol. 2020 Jul;22(7):2680-2692. doi: 10.1111/1462-2920.14987. Epub 2020 Mar 30.
Many Listeria species including L. monocytogenes contain the pathway for the biosynthesis of protocatechuate from shikimate and quinate. The qui1 and qui2 operons within these Listeria spp. encode enzymes for this pathway. The diversion of shikimate pathway intermediates in some Listeria species to produce protocatechuate suggests an important biological role for this compound to these organisms. A total of seven ORFs, including quiC2, were identified within qui1 and qui2, however only three proteins encoded by the operons have been functionally annotated. The final step in Listeria's protocatechuate biosynthesis involves the conversion of dehydroshikimate by a dehydroshikimate dehydratase (DSD). In this study, we demonstrate that QuiC2 functions as a DSD in Listeria spp. through biochemical and structural analyses. Moreover, we show that QuiC2 forms a phylogenetic cluster distinct from other functionally annotated DSDs. The individual phylogenetic clusters of DSD are represented by enzymes that produce protocatechuate for distinct biological processes. Similarly, QuiC2 is expected to produce protocatechuate for a novel biological process. We postulate that protocatechuate produced by DSDs found within the QuiC2 phylogenetic cluster provides an ecological niche for representative organisms.
许多李斯特菌物种,包括单核细胞增生李斯特菌,都含有从莽草酸和奎尼酸生物合成原儿茶酸的途径。这些李斯特菌 spp.中的 qui1 和 qui2 操纵子编码该途径的酶。一些李斯特菌物种中莽草酸途径中间体的分流以产生原儿茶酸表明该化合物对这些生物体具有重要的生物学作用。在 qui1 和 qui2 中总共鉴定出了 7 个 ORF,包括 quiC2,但该操纵子编码的只有 3 种蛋白质具有功能注释。李斯特菌原儿茶酸生物合成的最后一步涉及通过脱氢莽草酸脱水酶 (DSD) 将脱氢莽草酸转化。在这项研究中,我们通过生化和结构分析证明 QuiC2 在李斯特菌属中作为 DSD 发挥作用。此外,我们表明 QuiC2 形成了一个与其他功能注释的 DSD 明显不同的系统发育簇。DSD 的各个系统发育簇由产生用于不同生物过程的原儿茶酸的酶代表。同样,预计 QuiC2 将产生原儿茶酸用于新的生物过程。我们假设在 QuiC2 系统发育簇中发现的 DSD 产生的原儿茶酸为代表生物体提供了生态位。