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基于虚拟筛选、生物评价和分子动力学模拟鉴定新型昆虫β-N-乙酰己糖苷酶 OfHex1 抑制剂。

Identification of novel insect β-N-acetylhexosaminidase OfHex1 inhibitors based on virtual screening, biological evaluation, and molecular dynamics simulation.

机构信息

Department of Applied Chemistry, College of Science, China Agricultural University, Beijing, China.

Institute of Plant Protection, Chinese Academy of Agricultural Sciences, Beijing, China.

出版信息

J Biomol Struct Dyn. 2021 Mar;39(5):1735-1743. doi: 10.1080/07391102.2020.1743758. Epub 2020 Mar 30.

DOI:10.1080/07391102.2020.1743758
PMID:32193983
Abstract

Chitin can be widely found in the fungal cell wall, nematode eggshells, and the exoskeleton of arthropods; however, it is completely absent from higher plants and mammals. The process of chitin degradation is essential for both growth and maturation of insects. Thus, inhibiting chitin degradation is a promising strategy for the control and management of pests. The chitinolytic β--acetyl-D-hexosaminidase OfHex1 of (one of the most destructive pests) has been suggested as a potential target for the design of eco-friendly pesticides. This study presents the sequential virtual screening of the ZINC library with 8 million compounds, targeting OfHex1. After confirmation via enzyme inhibition experiments, compound exhibited potential inhibitory activity against OfHex1 with a of 28.9 ± 0.5 μM and significant selectivity (IC > 100 μM against HsHexB and hOGA). Molecular dynamics simulations combined with binding free energy and free energy decomposition calculations were conducted to investigate the molecular basis underlying the potency of these inhibitors toward OfHex1. The present work provides useful information for the future rational design of novel and potent OfHex1 inhibitorsCommunicated by Ramaswamy H. Sarma.

摘要

几丁质广泛存在于真菌细胞壁、线虫卵壳和节肢动物的外骨骼中;然而,它在高等植物和哺乳动物中完全不存在。几丁质降解的过程对于昆虫的生长和成熟至关重要。因此,抑制几丁质降解是控制和管理害虫的一种有前途的策略。(一种最具破坏性的害虫之一)的几丁质裂解β--乙酰-D-己糖胺酶 OfHex1 已被提议作为设计环保型农药的潜在靶标。本研究对 ZINC 库中的 800 万个化合物进行了顺序虚拟筛选,以靶向 OfHex1。通过酶抑制实验确认后,化合物 表现出对 OfHex1 的潜在抑制活性,其 为 28.9±0.5 μM,具有显著的选择性(对 HsHexB 和 hOGA 的 IC > 100 μM)。进行了分子动力学模拟,并结合结合自由能和自由能分解计算,以研究这些抑制剂对 OfHex1 的效力的分子基础。本工作为未来合理设计新型强效 OfHex1 抑制剂提供了有用的信息。由 Ramaswamy H. Sarma 交流。

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