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原子接触在肌红蛋白振动能量转移中的作用。

Role of atomic contacts in vibrational energy transfer in myoglobin.

作者信息

Mizuno Misao, Mizutani Yasuhisa

机构信息

Department of Chemistry, Graduate School of Science, Osaka University, 1-1 Machikaneyama, Toyonaka, Osaka, 560-0043, Japan.

出版信息

Biophys Rev. 2020 Apr;12(2):511-518. doi: 10.1007/s12551-020-00681-w. Epub 2020 Mar 23.

Abstract

Heme proteins are ideal systems to investigate vibrational energy flow at the atomic level. Upon photoexcitation, a large amount of excess vibrational energy is selectively deposited on heme due to extremely fast internal conversion. This excess energy is redistributed to the surrounding protein moiety and then to water. Vibrational energy flow in myoglobin (Mb) was examined using picosecond time-resolved anti-Stokes ultraviolet resonance Raman (UVRR) spectroscopy. We used the Trp residue directly contacting the heme group as a selective probe for vibrationally excited populations. Trp residues were placed at different position close to the heme by site-directed mutagenesis. This technique allows us to monitor the excess energy on residue-to-residue basis. Anti-Stokes UVRR measurements for Mb mutants suggest that the dominant channel for energy transfer in Mb is the pathway through atomic contacts between heme and nearby amino acid residues as well as that between the protein and solvent water. It is found that energy flow through proteins is analogous to collisional exchange processes in solutions.

摘要

血红素蛋白是在原子水平上研究振动能量流动的理想体系。光激发后,由于极快的内转换过程,大量多余的振动能量被选择性地沉积在血红素上。这些多余的能量会重新分布到周围的蛋白质部分,然后再传递到水中。利用皮秒时间分辨反斯托克斯紫外共振拉曼(UVRR)光谱研究了肌红蛋白(Mb)中的振动能量流动。我们将直接与血红素基团接触的色氨酸(Trp)残基用作振动激发态群体的选择性探针。通过定点诱变将Trp残基置于靠近血红素的不同位置。该技术使我们能够逐个残基地监测多余能量。对Mb突变体的反斯托克斯UVRR测量表明,Mb中能量转移的主要通道是通过血红素与附近氨基酸残基之间以及蛋白质与溶剂水之间的原子接触途径。研究发现,通过蛋白质的能量流动类似于溶液中的碰撞交换过程。

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Role of atomic contacts in vibrational energy transfer in myoglobin.原子接触在肌红蛋白振动能量转移中的作用。
Biophys Rev. 2020 Apr;12(2):511-518. doi: 10.1007/s12551-020-00681-w. Epub 2020 Mar 23.
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Importance of Atomic Contacts in Vibrational Energy Flow in Proteins.原子接触在蛋白质振动能量流动中的重要性。
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本文引用的文献

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Energy Transport across Interfaces in Biomolecular Systems.生物分子系统中界面的能量传递
J Phys Chem B. 2019 Nov 14;123(45):9507-9524. doi: 10.1021/acs.jpcb.9b07086. Epub 2019 Oct 1.
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Importance of Atomic Contacts in Vibrational Energy Flow in Proteins.原子接触在蛋白质振动能量流动中的重要性。
J Phys Chem Lett. 2016 Jun 2;7(11):1950-4. doi: 10.1021/acs.jpclett.6b00785. Epub 2016 May 12.
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Scaling Rules for Vibrational Energy Transport in Globular Proteins.球状蛋白质中振动能量传输的标度规则。
J Phys Chem Lett. 2016 Jan 7;7(1):25-30. doi: 10.1021/acs.jpclett.5b02514. Epub 2015 Dec 11.
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Energy propagation and network energetic coupling in proteins.蛋白质中的能量传播与网络能量耦合
J Phys Chem B. 2015 Feb 5;119(5):1835-46. doi: 10.1021/jp509906m. Epub 2015 Jan 21.
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Direct observation of vibrational energy flow in cytochrome c.直接观察细胞色素 c 中的振动能量流。
J Phys Chem B. 2011 Nov 10;115(44):13057-64. doi: 10.1021/jp207500b. Epub 2011 Oct 13.

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