Department of Endoscopic Surgery of Thyroid Gland and Breast, The Yinzhou People's Hospital, Ningbo, P.R. China.
J Comput Biol. 2020 Oct;27(10):1509-1518. doi: 10.1089/cmb.2019.0491. Epub 2020 Mar 27.
Previous studies revealed that PBX1 ranked the third in the differentially expressed genes about development and progression of breast cancer (BC). Nevertheless, the role of PBX1 contributing to progression of BC has been unevaluated. Here, on the basis of ONCOMINE and GOBO databases, we compared BC samples with normal controls about the expression of PBX1 in various types of cancers, as well as their related expression levels in cancer cell lines by Cancer Cell Line Encyclopedia (CCLE) analysis. It was also found that, when compared with normal controls, PBX1 was markedly higher expressed not only in BC samples but also in BC cell lines, and coexpressed with EMP2 by ONCOMINE and CCLE coexpression analysis, which was also expressed higher in BC samples and BC cell lines similarly. According to Kaplan-Meier plotter, we further explored the prognostic functions of PBX1 and EMP2 in different molecular subtypes of BC, respectively. We demonstrated that overexpression of PBX1 mRNA was correlated with worse survival in luminal B subtype BC, whereas increased EMP2 expression was associated with shorter relapse-free survival in estrogen receptor (ER)-negative patients. Combining with previous studies, we could make a conclusion that coexpression of PBX1 and EMP2 predicts poor prognosis in ER-negative BC, which could be effective biomarkers for BC.
先前的研究表明 PBX1 在乳腺癌(BC)的发生和发展的差异表达基因中排名第三。然而,PBX1 促进 BC 进展的作用尚未得到评估。在这里,我们基于 ONCOMINE 和 GOBO 数据库,比较了 ONCOMINE 和 CCLE 分析中各种癌症中 BC 样本与正常对照之间 PBX1 的表达,以及它们在癌细胞系中的相关表达水平。还发现,与正常对照相比,不仅在 BC 样本中,而且在 BC 细胞系中 PBX1 的表达明显更高,并且通过 ONCOMINE 和 CCLE 共表达分析与 EMP2 共表达,这在 BC 样本和 BC 细胞系中同样表达更高。根据 Kaplan-Meier plotter,我们进一步分别探讨了 PBX1 和 EMP2 在不同分子亚型 BC 中的预后功能。我们表明,PBX1 mRNA 的过表达与 luminal B 亚型 BC 的生存预后不良相关,而 EMP2 表达增加与 ER 阴性患者无复发生存期缩短相关。结合先前的研究,我们可以得出结论,PBX1 和 EMP2 的共表达预测 ER 阴性 BC 的预后不良,这可能是 BC 的有效生物标志物。