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生物信息学分析提示三个枢纽基因可能是胰腺导管腺癌的一个重要预后生物标志物。

Bioinformatic Analysis Suggests That Three Hub Genes May Be a Vital Prognostic Biomarker in Pancreatic Ductal Adenocarcinoma.

机构信息

Department of Gastroenterology, Changhai Hospital, Second Military Medical University, Shanghai, China.

Departments of Hematology, The First Affiliated Hospital of University of South China, University of South China, Hengyang, Hunan, China.

出版信息

J Comput Biol. 2020 Nov;27(11):1595-1609. doi: 10.1089/cmb.2019.0367. Epub 2020 Mar 27.

Abstract

Pancreatic ductal adenocarcinoma (PDAC) is one of the most lethal malignancies worldwide due to its ineffective diagnosis and poor prognosis. It is essential to identify differentially expressed genes (DEGs) in PDAC to gain new insights into its underlying molecular mechanisms, as well as identify potential diagnostic and therapeutic targets. We screened 135 DEGs from the GSE15417, GSE16515, and GSE28735 PDAC and normal pancreatic tissue microarray data sets, and identified 16 DEGs that were correlated with PDAC prognosis through the Kaplan-Meier survival analysis and log-rank tests. The Cancer Genome Atlas and Oncomine databases validated the expression levels of 16 candidate genes (, , , , , , , , , , , , , , , and ). Weighted gene coexpression network analysis (WGCNA) and protein and protein interaction (PPI) analysis identified three hub genes-, , and -that are likely important in PDAC prognosis. Gene Ontology and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway analysis demonstrated that they were enriched in functions of extracellular matrix organization, extracellular structure organization, and positive regulation of cell migration. Taken together, we identified three pivotal genes for PDAC, which can improve our understanding of its pathogenesis, progression, and prognosis.

摘要

胰腺导管腺癌(PDAC)是全球最致命的恶性肿瘤之一,其原因是诊断效果不佳且预后较差。因此,鉴定 PDAC 中的差异表达基因(DEGs)对于深入了解其潜在的分子机制以及确定潜在的诊断和治疗靶点至关重要。我们从 GSE15417、GSE16515 和 GSE28735 PDAC 和正常胰腺组织微阵列数据集筛选了 135 个 DEGs,并通过 Kaplan-Meier 生存分析和对数秩检验鉴定了与 PDAC 预后相关的 16 个 DEG。The Cancer Genome Atlas 和 Oncomine 数据库验证了 16 个候选基因(,, , , , , , , , , , , , , , )的表达水平。加权基因共表达网络分析(WGCNA)和蛋白质-蛋白质相互作用(PPI)分析鉴定出三个与 PDAC 预后相关的关键基因-、和-。基因本体论和京都基因与基因组百科全书(KEGG)通路分析表明,它们富集于细胞外基质组织、细胞外结构组织和细胞迁移的正向调节等功能。综上所述,我们鉴定出了三个对 PDAC 至关重要的基因,这可以增进我们对其发病机制、进展和预后的理解。

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