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基于连续生物标志物的嵌套亚总体优化多重检验程序。

Optimized multiple testing procedures for nested sub-populations based on a continuous biomarker.

机构信息

Center for Medical Statistics, Informatics and Intelligent Systems, Medical University of Vienna, Vienna, Austria.

Advanced Methodology and Data Science, Novartis Pharma AG, Basel, Switzerland.

出版信息

Stat Methods Med Res. 2020 Oct;29(10):2945-2957. doi: 10.1177/0962280220913071. Epub 2020 Mar 30.

DOI:10.1177/0962280220913071
PMID:32223528
Abstract

An important step in the development of targeted therapies is the identification and confirmation of sub-populations where the treatment has a positive treatment effect compared to a control. These sub-populations are often based on continuous biomarkers, measured at baseline. For example, patients can be classified into biomarker low and biomarker high subgroups, which are defined via a threshold on the continuous biomarker. However, if insufficient information on the biomarker is available, the a priori choice of the threshold can be challenging and it has been proposed to consider several thresholds and to apply appropriate multiple testing procedures to test for a treatment effect in the corresponding subgroups controlling the family-wise type 1 error rate. In this manuscript we propose a framework to select optimal thresholds and corresponding optimized multiple testing procedures that maximize the expected power to identify at least one subgroup with a positive treatment effect. Optimization is performed over a prior on a family of models, modelling the relation of the biomarker with the expected outcome under treatment and under control. We find that for the considered scenarios 3 to 4 thresholds give the optimal power. If there is a prior belief on a small subgroup where the treatment has a positive effect, additional optimization of the spacing of thresholds may result in a large benefit. The procedure is illustrated with a clinical trial example in depression.

摘要

在靶向治疗的发展过程中,一个重要的步骤是确定和确认治疗效果相对于对照有积极影响的亚人群。这些亚人群通常基于基线测量的连续生物标志物。例如,可以将患者分为生物标志物低和生物标志物高亚组,通过连续生物标志物的阈值来定义。然而,如果生物标志物的信息不足,事先选择阈值可能具有挑战性,因此已经提出考虑几个阈值,并应用适当的多重检验程序来控制整体错误率,检验相应亚组中的治疗效果。在本文中,我们提出了一个框架来选择最优阈值和相应的优化多重检验程序,以最大限度地提高识别至少一个具有积极治疗效果的亚组的预期功效。优化是在对模型族的先验上进行的,该模型族对生物标志物与治疗和对照下预期结果之间的关系进行建模。我们发现,对于所考虑的情况,3 到 4 个阈值可以获得最佳功效。如果对治疗有积极效果的小亚组有先验信念,那么对阈值间距进行额外优化可能会带来很大的益处。该程序通过抑郁症临床试验的实例进行了说明。

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