Suppr超能文献

产隐藻素蓝藻菌株ATCC 53789的全基因组序列

Complete Genome Sequence of the Cryptophycin-Producing Cyanobacterium sp. Strain ATCC 53789.

作者信息

Tippelt Anna, Busche Tobias, Rückert Christian, Nett Markus

机构信息

Department of Biochemical and Chemical Engineering, TU Dortmund University, Dortmund, Germany.

IIT Biotech GmbH Bielefeld, Bielefeld University, Bielefeld, Germany.

出版信息

Microbiol Resour Announc. 2020 Apr 2;9(14):e00040-20. doi: 10.1128/MRA.00040-20.

Abstract

sp. strain ATCC 53789 is a producer of cryptophycins, which are promising anticancer agents. Here, we report the completely sequenced 8.7-Mb genome of sp. strain ATCC 53789. The sequence provides insights into the metabolic network of this cyanobacterial strain and illuminates its potential for the biosynthesis of secondary metabolites.

摘要

sp. 菌株ATCC 53789是隐藻素的产生菌,隐藻素是有前景的抗癌剂。在此,我们报道了sp. 菌株ATCC 53789的8.7兆碱基对的全基因组序列。该序列为深入了解这种蓝藻菌株的代谢网络提供了线索,并阐明了其在次生代谢物生物合成方面的潜力。

相似文献

1
Complete Genome Sequence of the Cryptophycin-Producing Cyanobacterium sp. Strain ATCC 53789.
Microbiol Resour Announc. 2020 Apr 2;9(14):e00040-20. doi: 10.1128/MRA.00040-20.
4
The Swinholide Biosynthesis Gene Cluster from a Terrestrial Cyanobacterium, Nostoc sp. Strain UHCC 0450.
Appl Environ Microbiol. 2018 Jan 17;84(3). doi: 10.1128/AEM.02321-17. Print 2018 Feb 1.
5
Analysis of the cryptophycin P450 epoxidase reveals substrate tolerance and cooperativity.
J Am Chem Soc. 2008 Apr 23;130(16):5492-8. doi: 10.1021/ja710520q. Epub 2008 Mar 26.
6
Transcription and regulation of the bidirectional hydrogenase in the cyanobacterium Nostoc sp. strain PCC 7120.
Appl Environ Microbiol. 2007 Sep;73(17):5435-46. doi: 10.1128/AEM.00756-07. Epub 2007 Jul 13.
8
Cryptophycins: a novel class of potent antimitotic antitumor depsipeptides.
Curr Pharm Des. 2001 Sep;7(13):1259-76. doi: 10.2174/1381612013397474.
10
Three new cryptophycins from Nostoc sp. GSV 224.
J Nat Prod. 1997 Mar;60(3):302-5. doi: 10.1021/np960700a.

引用本文的文献

1
Effect of salinity on scytonemin yield in endolithic cyanobacteria from the Atacama Desert.
Sci Rep. 2024 Apr 28;14(1):9731. doi: 10.1038/s41598-024-60499-4.
2
Depsipeptides Targeting Tumor Cells: Milestones from In Vitro to Clinical Trials.
Molecules. 2023 Jan 9;28(2):670. doi: 10.3390/molecules28020670.
3
High molecular weight DNA extraction strategies for long-read sequencing of complex metagenomes.
Mol Ecol Resour. 2022 Jul;22(5):1786-1802. doi: 10.1111/1755-0998.13588. Epub 2022 Feb 7.
4
Mining of Cyanobacterial Genomes Indicates Natural Product Biosynthetic Gene Clusters Located in Conjugative Plasmids.
Front Microbiol. 2021 Nov 4;12:684565. doi: 10.3389/fmicb.2021.684565. eCollection 2021.
5
Complete genome sequence of S136, producer of anticancer angucycline landomycin A.
3 Biotech. 2021 Jun;11(6):282. doi: 10.1007/s13205-021-02834-4. Epub 2021 May 21.

本文引用的文献

1
antiSMASH 5.0: updates to the secondary metabolite genome mining pipeline.
Nucleic Acids Res. 2019 Jul 2;47(W1):W81-W87. doi: 10.1093/nar/gkz310.
2
Simultaneous Production of Anabaenopeptins and Namalides by the Cyanobacterium Nostoc sp. CENA543.
ACS Chem Biol. 2017 Nov 17;12(11):2746-2755. doi: 10.1021/acschembio.7b00570. Epub 2017 Sep 29.
3
Unicycler: Resolving bacterial genome assemblies from short and long sequencing reads.
PLoS Comput Biol. 2017 Jun 8;13(6):e1005595. doi: 10.1371/journal.pcbi.1005595. eCollection 2017 Jun.
4
Canu: scalable and accurate long-read assembly via adaptive -mer weighting and repeat separation.
Genome Res. 2017 May;27(5):722-736. doi: 10.1101/gr.215087.116. Epub 2017 Mar 15.
5
Fast and accurate de novo genome assembly from long uncorrected reads.
Genome Res. 2017 May;27(5):737-746. doi: 10.1101/gr.214270.116. Epub 2017 Jan 18.
6
Pilon: an integrated tool for comprehensive microbial variant detection and genome assembly improvement.
PLoS One. 2014 Nov 19;9(11):e112963. doi: 10.1371/journal.pone.0112963. eCollection 2014.
7
Prokka: rapid prokaryotic genome annotation.
Bioinformatics. 2014 Jul 15;30(14):2068-9. doi: 10.1093/bioinformatics/btu153. Epub 2014 Mar 18.
8
Fast gapped-read alignment with Bowtie 2.
Nat Methods. 2012 Mar 4;9(4):357-9. doi: 10.1038/nmeth.1923.
9
Integrative genomics viewer.
Nat Biotechnol. 2011 Jan;29(1):24-6. doi: 10.1038/nbt.1754.
10
Assembly algorithms for next-generation sequencing data.
Genomics. 2010 Jun;95(6):315-27. doi: 10.1016/j.ygeno.2010.03.001. Epub 2010 Mar 6.

文献AI研究员

20分钟写一篇综述,助力文献阅读效率提升50倍。

立即体验

用中文搜PubMed

大模型驱动的PubMed中文搜索引擎

马上搜索

文档翻译

学术文献翻译模型,支持多种主流文档格式。

立即体验