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通过R-脊柱的蛋白质工程探究Nek7的构象灵活性和抑制剂结合情况。

Nek7 conformational flexibility and inhibitor binding probed through protein engineering of the R-spine.

作者信息

Byrne Matthew J, Nasir Nazia, Basmadjian Christine, Bhatia Chitra, Cunnison Rory F, Carr Katherine H, Mas-Droux Corine, Yeoh Sharon, Cano Céline, Bayliss Richard

机构信息

Astbury Centre for Structural Molecular Biology, School of Molecular and Cellular Biology, Faculty of Biological Sciences, University of Leeds, Leeds, U.K.

Newcastle University Centre for Cancer, School of Natural and Environmental Sciences, Newcastle University, Newcastle Upon Tyne, U.K.

出版信息

Biochem J. 2020 Apr 30;477(8):1525-1539. doi: 10.1042/BCJ20200128.

Abstract

Nek7 is a serine/threonine-protein kinase required for proper spindle formation and cytokinesis. Elevated Nek7 levels have been observed in several cancers, and inhibition of Nek7 might provide a route to the development of cancer therapeutics. To date, no selective and potent Nek7 inhibitors have been identified. Nek7 crystal structures exhibit an improperly formed regulatory-spine (R-spine), characteristic of an inactive kinase. We reasoned that the preference of Nek7 to crystallise in this inactive conformation might hinder attempts to capture Nek7 in complex with Type I inhibitors. Here, we have introduced aromatic residues into the R-spine of Nek7 with the aim to stabilise the active conformation of the kinase through R-spine stacking. The strong R-spine mutant Nek7SRS retained catalytic activity and was crystallised in complex with compound 51, an ATP-competitive inhibitor of Nek2 and Nek7. Subsequently, we obtained the same crystal form for wild-type Nek7WT in apo form and bound to compound 51. The R-spines of the three well-ordered Nek7WT molecules exhibit variable conformations while the R-spines of the Nek7SRS molecules all have the same, partially stacked configuration. Compound 51 bound to Nek2 and Nek7 in similar modes, but differences in the precise orientation of a substituent highlights features that could be exploited in designing inhibitors that are selective for particular Nek family members. Although the SRS mutations are not required to obtain a Nek7-inhibitor structure, we conclude that it is a useful strategy for restraining the conformation of a kinase in order to promote crystallogenesis.

摘要

Nek7是一种丝氨酸/苏氨酸蛋白激酶,是正确纺锤体形成和胞质分裂所必需的。在几种癌症中已观察到Nek7水平升高,抑制Nek7可能为癌症治疗药物的开发提供一条途径。迄今为止,尚未发现选择性和强效的Nek7抑制剂。Nek7晶体结构显示出调节性脊柱(R-spine)形成不当,这是无活性激酶的特征。我们推断,Nek7倾向于以这种无活性构象结晶,这可能会阻碍捕获与I型抑制剂结合的Nek7复合物的尝试。在这里,我们将芳香族残基引入Nek7的R-spine中,目的是通过R-spine堆积来稳定激酶的活性构象。强R-spine突变体Nek7SRS保留了催化活性,并与化合物51结晶,化合物51是Nek2和Nek7的ATP竞争性抑制剂。随后,我们获得了apo形式的野生型Nek7WT以及与化合物51结合的相同晶体形式。三个有序的Nek7WT分子的R-spine呈现出可变构象,而Nek7SRS分子的R-spine都具有相同的部分堆积构型。化合物51以类似的模式与Nek2和Nek7结合,但取代基精确取向的差异突出了可用于设计对特定Nek家族成员具有选择性的抑制剂的特征。尽管获得Nek7抑制剂结构不需要SRS突变,但我们得出结论,这是一种抑制激酶构象以促进结晶的有用策略。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1ae0/7200626/0bd8c78ff96d/BCJ-477-1525-g0001.jpg

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