van Boheemen Lotte A, Hodgins Kathryn A
School of Biological Sciences, Monash University, Clayton, Vic., Australia.
Mol Ecol. 2020 Nov;29(21):4102-4117. doi: 10.1111/mec.15429. Epub 2020 Apr 19.
Uncovering the genomic basis of repeated adaption can provide important insights into the constraints and biases that limit the diversity of genetic responses. Demographic processes such as admixture or bottlenecks affect genetic variation underlying traits experiencing selection. The impact of these processes on the genetic basis of adaptation remains, however, largely unexamined empirically. We here test repeatability in phenotypes and genotypes along parallel climatic clines within the native North American and introduced European and Australian Ambrosia artemisiifolia ranges. To do this, we combined multiple lines of evidence from phenotype-environment associations, F -like outlier tests, genotype-environment associations and genotype-phenotype associations. We used 853 individuals grown in common garden from 84 sampling locations, targeting 19 phenotypes, >83 k SNPs and 22 environmental variables. We found that 17%-26% of loci with adaptive signatures were repeated among ranges, despite alternative demographic histories shaping genetic variation and genetic associations. Our results suggest major adaptive changes can occur on short timescales, with seemingly minimum impacts due to demographic changes linked to introduction. These patterns reveal some predictability of evolutionary change during range expansion, key in a world facing ongoing climate change, and rapid invasive spread.
揭示重复适应的基因组基础可以为限制遗传反应多样性的限制因素和偏差提供重要见解。诸如混合或瓶颈等人口过程会影响经历选择的性状的遗传变异。然而,这些过程对适应遗传基础的影响在很大程度上仍未得到实证检验。我们在此测试北美本土以及引入的欧洲和澳大利亚豚草分布范围内沿平行气候梯度的表型和基因型的重复性。为此,我们结合了来自表型 - 环境关联、F 类异常值检验、基因型 - 环境关联和基因型 - 表型关联的多条证据。我们使用了来自 84 个采样地点在共同花园中种植的 853 个个体,针对 19 种表型、超过 83,000 个单核苷酸多态性(SNP)和 22 个环境变量。我们发现,尽管不同的人口历史塑造了遗传变异和遗传关联,但在不同分布范围内,17% - 26%具有适应性特征的基因座是重复的。我们的结果表明,主要的适应性变化可以在短时间尺度上发生,与引入相关的人口变化造成的影响似乎最小。这些模式揭示了在范围扩张过程中进化变化的一些可预测性,这在一个面临持续气候变化和快速入侵扩散的世界中至关重要。