成功入侵的基因组学研究:近期研究呈现的图景

Genomic investigations of successful invasions: the picture emerging from recent studies.

作者信息

Kołodziejczyk Joanna, Fijarczyk Anna, Porth Ilga, Robakowski Piotr, Vella Noel, Vella Adriana, Kloch Agnieszka, Biedrzycka Aleksandra

机构信息

Institute of Nature Conservation, Polish Academy of Sciences, Mickiewicza 33, Kraków, 31-120, Poland.

Natural Resources Canada, Laurentian Forestry Centre, 1055 Rue du Peps, Québec City, Quebec, G1V 4C7, Canada.

出版信息

Biol Rev Camb Philos Soc. 2025 Jun;100(3):1396-1418. doi: 10.1111/brv.70005. Epub 2025 Feb 16.

Abstract

Invasion biology aims to identify traits and mechanisms that contribute to successful invasions, while also providing general insights into the mechanisms underlying population expansion and adaptation to rapid climate and habitat changes. Certain phenotypic attributes have been linked to successful invasions, and the role of genetics has been critical in understanding adaptation of invasive species. Nevertheless, a comprehensive summary evaluating the most common evolutionary mechanisms associated with successful invasions across species and environments is still lacking. Here we present a systematic review of studies since 2015 that have applied genomic tools to investigate mechanisms of successful invasions across different organisms. We examine demographic patterns such as changes in genomic diversity at the population level, the presence of genetic bottlenecks and gene flow in the invasive range. We review mechanisms of adaptation such as selection from standing genetic variation and de novo mutations, hybridisation and introgression, all of which can have an impact on invasion success. This comprehensive review of recent articles on the genomic diversity of invasive species led to the creation of a searchable database to provide researchers with an accessible resource. Analysis of this database allowed quantitative assessment of demographic and adaptive mechanisms acting in invasive species. A predominant role of admixture in increasing levels of genetic diversity enabling molecular adaptation in novel habitats is the most important finding of our study. The "genetic paradox" of invasive species was not validated in genomic data across species and ecosystems. Even though the presence of genetic drift and bottlenecks is commonly reported upon invasion, a large reduction in genomic diversity is rarely observed. Any decrease in genetic diversity is often relatively mild and almost always restored via gene flow between different invasive populations. The fact that loci under selection are frequently detected suggests that adaptation to novel habitats on a molecular level is not hindered. The above findings are confirmed herein for the first time in a semi-quantitative manner by molecular data. We also point to gaps and potential improvements in the design of studies of mechanisms driving rapid molecular adaptation in invasive populations. These include the scarcity of comprehensive studies that include sampling from multiple native and invasive populations, identification of invasion sources, longitudinal population sampling, and the integration of fitness measures into genomic analyses. We also note that the potential of whole genome studies is often not exploited fully in predicting invasive potential. Comparative genomic studies identifying genome features promoting invasions are underrepresented despite their potential for use as a tool in invasive species control.

摘要

入侵生物学旨在识别有助于成功入侵的特征和机制,同时也为种群扩张以及适应快速气候变化和栖息地变化的潜在机制提供一般性见解。某些表型属性与成功入侵有关,遗传学在理解入侵物种的适应性方面发挥了关键作用。然而,目前仍缺乏一份全面的综述来评估跨物种和环境与成功入侵相关的最常见进化机制。在此,我们对自2015年以来应用基因组工具研究不同生物体成功入侵机制的研究进行了系统综述。我们研究了种群水平上基因组多样性的变化、遗传瓶颈的存在以及入侵范围内的基因流动等种群动态模式。我们回顾了适应性机制,如从现有遗传变异和新生突变中进行选择、杂交和基因渗入,所有这些都可能影响入侵的成功。对近期有关入侵物种基因组多样性文章的这一全面综述促成了一个可搜索数据库的创建,为研究人员提供了一个可获取的资源。对该数据库的分析使得对入侵物种中起作用的种群动态和适应性机制进行定量评估成为可能。杂交在增加遗传多样性水平以实现对新栖息地的分子适应方面的主导作用是我们研究的最重要发现。跨物种和生态系统的基因组数据并未证实入侵物种的“遗传悖论”。尽管在入侵时普遍报道存在遗传漂变和瓶颈,但很少观察到基因组多样性大幅降低。遗传多样性的任何降低通常都相对轻微,而且几乎总是通过不同入侵种群之间的基因流动得以恢复。经常检测到受选择的基因座这一事实表明,在分子水平上对新栖息地的适应并未受到阻碍。上述发现首次通过分子数据以半定量方式在此得到证实。我们还指出了在驱动入侵种群快速分子适应机制研究设计方面的差距和潜在改进方向。这些包括缺乏全面研究,如未从多个本地和入侵种群进行采样、未确定入侵来源、未进行纵向种群采样以及未将适合度测量纳入基因组分析。我们还注意到,在预测入侵潜力方面,全基因组研究的潜力往往未得到充分利用。尽管比较基因组研究在识别促进入侵的基因组特征方面具有作为入侵物种控制工具的潜力,但此类研究目前较少。

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