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关于科利斯指数的最小值及其实现的分支树。

On the minimum value of the Colless index and the bifurcating trees that achieve it.

机构信息

Department of Mathematics and Computer Science, University of the Balearic Islands, 07122, Palma, Spain.

Balearic Islands Health Research Institute (IdISBa), 07010, Palma, Spain.

出版信息

J Math Biol. 2020 Jun;80(7):1993-2054. doi: 10.1007/s00285-020-01488-9. Epub 2020 Apr 7.

Abstract

Measures of tree balance play an important role in the analysis of phylogenetic trees. One of the oldest and most popular indices in this regard is the Colless index for rooted bifurcating trees, introduced by Colless (Syst Zool 31:100-104, 1982). While many of its statistical properties under different probabilistic models for phylogenetic trees have already been established, little is known about its minimum value and the trees that achieve it. In this manuscript, we fill this gap in the literature. To begin with, we derive both recursive and closed expressions for the minimum Colless index of a tree with n leaves. Surprisingly, these expressions show a connection between the minimum Colless index and the so-called Blancmange curve, a fractal curve. We then fully characterize the tree shapes that achieve this minimum value and we introduce both an algorithm to generate them and a recurrence to count them. After focusing on two extremal classes of trees with minimum Colless index (the maximally balanced trees and the greedy from the bottom trees), we conclude by showing that all trees with minimum Colless index also have minimum Sackin index, another popular balance index.

摘要

树平衡度量在系统发育树分析中起着重要作用。在这方面,最古老和最受欢迎的指标之一是 Colless 为有根二叉树引入的 Colless 指数,由 Colless(Syst Zool 31:100-104, 1982)提出。虽然已经确定了许多不同的系统发育树概率模型下的统计性质,但对其最小值和达到该值的树知之甚少。在本文中,我们填补了文献中的这一空白。首先,我们推导出具有 n 个叶子的树的最小 Colless 指数的递归和封闭表达式。令人惊讶的是,这些表达式显示了最小 Colless 指数与所谓的 Blancmange 曲线(一种分形曲线)之间的联系。然后,我们完全描述了达到此最小值的树形状,并引入了生成它们的算法和计数它们的递归。在关注具有最小 Colless 指数的两个极端树类(最大平衡树和从底部贪婪的树)之后,我们通过证明所有具有最小 Colless 指数的树也具有最小 Sackin 指数来得出结论,Sackin 指数是另一个流行的平衡指数。

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