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高分辨率晶体结构的“半三明治”型 Ru(II)配位化合物与鸡卵清溶菌酶和蛋白酶 K 的结合。

High-resolution crystal structures of a "half sandwich"-type Ru(II) coordination compound bound to hen egg-white lysozyme and proteinase K.

机构信息

Institute of Biosciences and Applications, National Centre for Scientific Research "Demokritos", 15341, Athens, Greece.

Department of Biotechnology, School of Applied Biology and Biotechnology, Agricultural University of Athens, 11855, Athens, Greece.

出版信息

J Biol Inorg Chem. 2020 Jun;25(4):635-645. doi: 10.1007/s00775-020-01786-z. Epub 2020 Apr 8.

DOI:10.1007/s00775-020-01786-z
PMID:32266561
Abstract

The high-resolution X-ray crystal structures of the adducts formed between the "half sandwich"-type Ru(II) coordination compound [Ru(1,4,7-trithiacyclononane)(ethane-1,2-diamine)Cl] and two proteins, namely hen egg-white lysozyme and proteinase K, are presented. The structures unveil that upon reaction with both enzymes the Ru(II) compound is coordinated by solvent-exposed aspartate residues after releasing the chloride ligand (Asp101 in lysozyme, Asp200 and Asp260 in proteinase K), while retaining the two chelating ligands. The adduct with Asp101 residue at the catalytic cleft of lysozyme is accompanied by residue-specific conformational changes to accommodate the Ru(II) fragment, whereas the complexes bound at the two calcium-binding sites of proteinase K revealed minimal structural perturbation of the enzyme. To the best of our knowledge, proteinase K is used here for the first time as a model system of protein metalation and these are the first X-ray crystal structures of protein adducts of a Ru(II) coordination compound that maintains its coordination sphere almost intact upon binding. Our data demonstrate the role of ligands in stabilizing the protein adducts via hydrophobic/aromatic or hydrogen-bonding interactions, as well as their underlying role in the selection of specific sites on the electrostatic potential surface of the enzymes.

摘要

呈现了“半三明治”型 Ru(II)配位化合物[Ru(1,4,7-三硫杂环壬烷)(乙烷-1,2-二胺)Cl]与两种蛋白质(即鸡卵清溶菌酶和蛋白酶 K)形成的加合物的高分辨率 X 射线晶体结构。这些结构揭示了,与两种酶反应后,Ru(II)化合物通过释放配体氯离子(溶菌酶中的 Asp101、蛋白酶 K 中的 Asp200 和 Asp260)后,被暴露在溶剂中的天冬氨酸残基配位,同时保留了两个螯合配体。与溶菌酶催化裂缝中的 Asp101 残基形成的加合物伴随着特定于残基的构象变化,以适应 Ru(II)片段,而结合在蛋白酶 K 的两个钙结合位点的复合物显示出对酶的最小结构扰动。据我们所知,蛋白酶 K 首次被用作蛋白质金属化的模型系统,这些是 Ru(II)配位化合物与蛋白质加合物的第一个 X 射线晶体结构,在结合时几乎保持其配位球完整。我们的数据证明了配体在通过疏水性/芳构性或氢键相互作用稳定蛋白质加合物方面的作用,以及它们在酶静电势能表面上选择特定部位的基础作用。

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