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基于 3,4-二氢异喹啉骨架的新型亮氨酰肽酶抑制剂的计算机筛选。

In Silico Screening for Novel Leucine Aminopeptidase Inhibitors with 3,4-Dihydroisoquinoline Scaffold.

机构信息

National Institute of Public Health-National Institute of Hygiene, Chocimska 24, 00-791 Warsaw, Poland.

National Medicines Institute, Chełmska 30/34, 00-725 Warsaw, Poland.

出版信息

Molecules. 2020 Apr 10;25(7):1753. doi: 10.3390/molecules25071753.

Abstract

Cancers are the leading cause of deaths worldwide. In 2018, an estimated 18.1 million new cancer cases and 9.6 million cancer-related deaths occurred globally. Several previous studies have shown that the enzyme, leucine aminopeptidase is involved in pathological conditions such as cancer. On the basis of the knowledge that isoquinoline alkaloids have antiproliferative activity and inhibitory activity towards leucine aminopeptidase, the present study was conducted a study which involved database search, virtual screening, and design of new potential leucine aminopeptidase inhibitors with a scaffold based on 3,4-dihydroisoquinoline. These compounds were then filtered through Lipinski's "rule of five," and 25 081 of them were then subjected to molecular docking. Next, three-dimensional quantitative structure-activity relationship (3D-QSAR) study was performed for the selected group of compounds with the best binding score results. The developed model, calculated by leave-one-out method, showed acceptable predictive and descriptive capability as represented by standard statistical parameters r (0.997) and q (0.717). Further, 35 compounds were identified to have an excellent predictive reliability. Finally, nine selected compounds were evaluated for drug-likeness and different pharmacokinetics parameters such as absorption, distribution, metabolism, excretion, and toxicity. Our methodology suggested that compounds with 3,4-dihydroisoquinoline moiety were potentially active in inhibiting leucine aminopeptidase and could be used for further in-depth in vitro and in vivo studies.

摘要

癌症是全球主要死因。2018 年,全球估计有 1810 万例新癌症病例和 960 万例癌症相关死亡。几项先前的研究表明,酶亮氨酸氨肽酶参与癌症等病理状况。基于异喹啉生物碱具有抗增殖活性和对亮氨酸氨肽酶的抑制活性的知识,本研究进行了一项基于 3,4-二氢异喹啉的支架设计新的潜在亮氨酸氨肽酶抑制剂的数据库搜索、虚拟筛选和设计研究。然后,通过 Lipinski 的“五规则”对这些化合物进行过滤,然后对 25081 个化合物进行分子对接。接下来,对所选具有最佳结合评分结果的化合物组进行三维定量构效关系(3D-QSAR)研究。通过留一法计算得出的开发模型,其标准统计参数 r(0.997)和 q(0.717)表示具有可接受的预测和描述能力。此外,确定了 35 种化合物具有出色的预测可靠性。最后,对 9 种选定的化合物进行了药物相似性和不同药代动力学参数(如吸收、分布、代谢、排泄和毒性)的评估。我们的方法表明,具有 3,4-二氢异喹啉结构的化合物具有抑制亮氨酸氨肽酶的潜在活性,可用于进一步深入的体外和体内研究。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f79a/7180978/cf9f809bcebb/molecules-25-01753-g001.jpg

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