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计算方法在发育毒性的分子起始事件的收集和预测中的应用。

Computational approach for collection and prediction of molecular initiating events in developmental toxicity.

机构信息

TECNUN, University of Navarra, San Sebastian, 20018, Spain.

BIOBIDE, San Sebastian, 20009, Spain.

出版信息

Reprod Toxicol. 2020 Jun;94:55-64. doi: 10.1016/j.reprotox.2020.03.010. Epub 2020 Apr 26.

Abstract

Developmental toxicity is defined as the occurrence of adverse effects on the developing organism as a result from exposure to a toxic agent. These alterations can have long-term acute effects. Current in vitro models present important limitations and the evaluation of toxicity is not entirely objective. In silico methods have also shown limited success, in part due to complex and varied mechanisms of action that mediate developmental toxicity, which are sometimes poorly understood. In this article, we compiled a dataset of compounds with developmental toxicity categories and annotated mechanisms of action for both toxic and non-toxic compounds (DVTOX). With it, we selected a panel of protein targets that might be part of putative Molecular Initiating Events (MIEs) of Adverse Outcome Pathways of developmental toxicity. The validity of this list of candidate MIEs was studied through the evaluation of new drug-target relationships that include such proteins, but were not part of the original database. Finally, an orthology analysis of this protein panel was conducted to select an appropriate animal model to assess developmental toxicity. We tested our approach using the zebrafish embryo toxicity test, finding positive results.

摘要

发育毒性是指由于暴露于有毒物质而对发育中的生物体产生的不良反应。这些改变可能会产生长期的急性影响。目前的体外模型存在重要的局限性,而且毒性评估并非完全客观。基于计算的方法也显示出了有限的成功,部分原因是介导发育毒性的作用机制复杂多样,有时理解不够透彻。在本文中,我们编译了一个具有发育毒性类别和毒性及非毒性化合物作用机制注释的化合物数据集(DVTOX)。在此基础上,我们选择了一组可能成为发育毒性不良结局途径中假定分子起始事件(MIE)的蛋白靶标。通过评估包含这些蛋白但不属于原始数据库的新的药物-靶标关系,研究了该候选 MIE 列表的有效性。最后,对该蛋白组进行了同源性分析,以选择合适的动物模型来评估发育毒性。我们使用斑马鱼胚胎毒性测试来测试我们的方法,结果为阳性。

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