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基因组医学实施研究中的结果反馈挑战:可操作变异实证反馈(RAVE)研究

Challenges in returning results in a genomic medicine implementation study: the Return of Actionable Variants Empirical (RAVE) study.

作者信息

Kochan David C, Winkler Erin, Lindor Noralane, Shaibi Gabriel Q, Olson Janet, Caraballo Pedro J, Freimuth Robert, Pacyna Joel E, Breitkopf Carmen Radecki, Sharp Richard R, Kullo Iftikhar J

机构信息

1Department of Cardiovascular Medicine, Mayo Clinic, Rochester, MN USA.

2Center for Individualized Medicine, Mayo Clinic, Rochester, MN USA.

出版信息

NPJ Genom Med. 2020 May 4;5:19. doi: 10.1038/s41525-020-0127-2. eCollection 2020.

Abstract

To inform the process of returning results in genome sequencing studies, we conducted a quantitative and qualitative assessment of challenges encountered during the Return of Actionable Variants Empiric (RAVE) study conducted at Mayo Clinic. Participants ( = 2535, mean age 63 ± 7, 57% female) were sequenced for 68 clinically actionable genes and 14 single nucleotide variants. Of 122 actionable results detected, 118 were returnable; results were returned by a genetic counselor-86 in-person and 12 by phone. Challenges in returning actionable results were encountered in a significant proportion (38%) of the cohort and were related to sequencing and participant contact. Sequencing related challenges ( = 14), affecting 13 participants, included reports revised based on clinical presentation ( = 3); reports requiring corrections ( = 2); mosaicism requiring alternative DNA samples for confirmation ( = 3); and variant re-interpretation due to updated informatics pipelines ( = 6). Participant contact related challenges ( = 44), affecting 38 participants, included nonresponders ( = 20), decedents ( = 1), and previously known results ( = 23). These results should be helpful to investigators preparing for return of results in large-scale genomic sequencing projects.

摘要

为了指导基因组测序研究中的结果反馈流程,我们对梅奥诊所开展的可操作变异经验性反馈(RAVE)研究期间遇到的挑战进行了定量和定性评估。对参与者(n = 2535,平均年龄63±7岁,57%为女性)进行了68个临床可操作基因和14个单核苷酸变异的测序。在检测到的122个可操作结果中,118个是可反馈的;结果由遗传咨询师反馈——86个为亲自反馈,12个通过电话反馈。在相当比例(38%)的队列中遇到了反馈可操作结果的挑战,这些挑战与测序和参与者联系有关。与测序相关的挑战(n = 14),影响了13名参与者,包括根据临床表现修订的报告(n = 3);需要校正的报告(n = 2);需要替代DNA样本进行确认的嵌合体(n = 3);以及由于更新的信息学流程而对变异进行重新解读(n = 6)。与参与者联系相关的挑战(n = 44),影响了38名参与者,包括无回应者(n = 20)、已故者(n = 1)和先前已知的结果(n = 23)。这些结果应该有助于为大规模基因组测序项目的结果反馈做准备的研究人员。

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