• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

基于空间约束混合模型的组织病理学图像染色的无类别加权归一化。

Class-Agnostic Weighted Normalization of Staining in Histopathology Images Using a Spatially Constrained Mixture Model.

出版信息

IEEE Trans Med Imaging. 2020 Nov;39(11):3355-3366. doi: 10.1109/TMI.2020.2992108. Epub 2020 Oct 28.

DOI:10.1109/TMI.2020.2992108
PMID:32386145
Abstract

The colorless biopsied tissue samples are usually stained in order to visualize different microscopic structures for diagnostic purposes. But color variations associated with the process of sample preparation, usage of raw materials, diverse staining protocols, and using different slide scanners may adversely influence both visual inspection and computer-aided image analysis. As a result, many methods are proposed for histopathology image stain normalization in recent years. In this study, we introduce a novel approach for stain normalization based on learning a mixture of multivariate skew-normal distributions for stain clustering and parameter estimation alongside a stain transformation technique. The proposed method, labeled "Class-Agnostic Weighted Normalization" (short CLAW normalization), has the ability to normalize a source image by learning the color distribution of both source and target images within an expectation-maximization framework. The novelty of this approach is its flexibility to quantify the underlying both symmetric and nonsymmetric distributions of the different stain components while it is considering the spatial information. The performance of this new stain normalization scheme is tested on several publicly available digital pathology datasets to compare it against state-of-the-art normalization algorithms in terms of ability to preserve the image structure and information. All in all, our proposed method performed superior more consistently in comparison with existing methods in terms of information preservation, visual quality enhancement, and boosting computer-aided diagnosis algorithm performance.

摘要

无色活检组织样本通常经过染色,以便为诊断目的可视化不同的微观结构。但是,与样本制备过程、原材料使用、不同的染色方案以及使用不同的载玻片扫描仪相关的颜色变化可能会对视觉检查和计算机辅助图像分析产生不利影响。因此,近年来提出了许多用于组织病理学图像染色归一化的方法。在本研究中,我们提出了一种基于学习多元偏斜正态分布混合的新方法,用于染色聚类和参数估计,以及染色转换技术。所提出的方法标记为“无类别的加权归一化”(CLAW 归一化),具有通过在期望最大化框架内学习源和目标图像的颜色分布来归一化源图像的能力。这种方法的新颖之处在于它能够在考虑空间信息的同时量化不同染色成分的潜在对称和非对称分布。我们在几个公开可用的数字病理学数据集上测试了这种新的染色归一化方案,以根据其保留图像结构和信息的能力与最先进的归一化算法进行比较。总的来说,与现有的方法相比,我们提出的方法在信息保留、视觉质量增强和提高计算机辅助诊断算法性能方面表现更优,更为一致。

相似文献

1
Class-Agnostic Weighted Normalization of Staining in Histopathology Images Using a Spatially Constrained Mixture Model.基于空间约束混合模型的组织病理学图像染色的无类别加权归一化。
IEEE Trans Med Imaging. 2020 Nov;39(11):3355-3366. doi: 10.1109/TMI.2020.2992108. Epub 2020 Oct 28.
2
Stain Color Adaptive Normalization (SCAN) algorithm: Separation and standardization of histological stains in digital pathology.染色颜色自适应归一化(SCAN)算法:数字病理学中组织学染色的分离与标准化
Comput Methods Programs Biomed. 2020 Sep;193:105506. doi: 10.1016/j.cmpb.2020.105506. Epub 2020 Apr 17.
3
A Complete Color Normalization Approach to Histopathology Images Using Color Cues Computed From Saturation-Weighted Statistics.一种使用从饱和度加权统计计算出的颜色线索对组织病理学图像进行完全颜色归一化的方法。
IEEE Trans Biomed Eng. 2015 Jul;62(7):1862-73. doi: 10.1109/TBME.2015.2405791. Epub 2015 Feb 19.
4
Retinex model based stain normalization technique for whole slide image analysis.基于 Retinex 模型的全切片图像分析染色归一化技术。
Comput Med Imaging Graph. 2021 Jun;90:101901. doi: 10.1016/j.compmedimag.2021.101901. Epub 2021 Mar 17.
5
A nonlinear mapping approach to stain normalization in digital histopathology images using image-specific color deconvolution.一种使用特定图像颜色反卷积对数字组织病理学图像进行染色归一化的非线性映射方法。
IEEE Trans Biomed Eng. 2014 Jun;61(6):1729-38. doi: 10.1109/TBME.2014.2303294.
6
Normalization of HE-stained histological images using cycle consistent generative adversarial networks.使用循环一致生成对抗网络对 HE 染色组织学图像进行归一化。
Diagn Pathol. 2021 Aug 6;16(1):71. doi: 10.1186/s13000-021-01126-y.
7
Bayesian K-SVD for H and E blind color deconvolution. Applications to stain normalization, data augmentation and cancer classification.贝叶斯 K-SVD 用于 H 和 E 盲色反卷积。在染色归一化、数据增强和癌症分类中的应用。
Comput Med Imaging Graph. 2022 Apr;97:102048. doi: 10.1016/j.compmedimag.2022.102048. Epub 2022 Feb 15.
8
Stain Normalization using Sparse AutoEncoders (StaNoSA): Application to digital pathology.使用稀疏自动编码器进行染色归一化(StaNoSA):在数字病理学中的应用。
Comput Med Imaging Graph. 2017 Apr;57:50-61. doi: 10.1016/j.compmedimag.2016.05.003. Epub 2016 May 16.
9
A study about color normalization methods for histopathology images.一项关于组织病理学图像颜色归一化方法的研究。
Micron. 2018 Nov;114:42-61. doi: 10.1016/j.micron.2018.07.005. Epub 2018 Aug 1.
10
The role of unpaired image-to-image translation for stain color normalization in colorectal cancer histology classification.非配对图像到图像翻译在结直肠癌组织学分类中用于染色颜色归一化的作用。
Comput Methods Programs Biomed. 2023 Jun;234:107511. doi: 10.1016/j.cmpb.2023.107511. Epub 2023 Mar 26.

引用本文的文献

1
Single-cell Heterogeneity-aware Transformer-guided Multiple Instance Learning for Cancer Aneuploidy Prediction from Whole Slide Histopathology Images.用于从全切片组织病理学图像预测癌症非整倍体的单细胞异质性感知Transformer引导的多实例学习
IEEE J Biomed Health Inform. 2023 Mar 28;PP. doi: 10.1109/JBHI.2023.3262454.
2
CroReLU: Cross-Crossing Space-Based Visual Activation Function for Lung Cancer Pathology Image Recognition.CroReLU:用于肺癌病理图像识别的基于交叉空间的视觉激活函数
Cancers (Basel). 2022 Oct 22;14(21):5181. doi: 10.3390/cancers14215181.