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2-[(2)-2-(2-氯亚苄基)-3-氧代-3,4-二氢-2H-1,4-苯并噻嗪-4-基]乙酸乙酯的晶体结构、 Hirshfeld表面分析及相互作用能、密度泛函理论研究与抗菌活性研究

Crystal structure, Hirshfeld surface analysis and inter-action energy, DFT and anti-bacterial activity studies of ethyl 2-[(2)-2-(2-chloro-benzyl-idene)-3-oxo-3,4-di-hydro-2-1,4-benzo-thia-zin-4-yl]acetate.

作者信息

Sebbar Ghizlane, Mohamed Ellouz, Hökelek Tuncer, Mague Joel T, Sebbar Nada Kheira, Essassi El Mokhtar, Belkadi Bouchra

机构信息

Laboratory of Microbiology and Molecular Biology, Faculty of Sciences, University Mohammed V, Rabat, Morocco.

Laboratoire de Chimie Organique Heterocyclique URAC 21, Pole de Competence Pharmacochimie, Faculté des Sciences, Université Mohammed V, Rabat, Morocco.

出版信息

Acta Crystallogr E Crystallogr Commun. 2020 Apr 7;76(Pt 5):629-636. doi: 10.1107/S2056989020004119. eCollection 2020 May 1.

Abstract

The title compound, CHClNOS, consists of chloro-phenyl methyl-idene and di-hydro-benzo-thia-zine units linked to an acetate moiety, where the thia-zine ring adopts a screw-boat conformation. In the crystal, two sets of weak C-H⋯O (Ph = phenyl and Dbt = di-hydro-benzo-thia-zine) hydrogen bonds form layers of mol-ecules parallel to the plane. The layers stack along the -axis direction with inter-calation of the ester chains. The crystal studied was a two component twin with a refined BASF of 0.34961 (5). The Hirshfeld surface analysis of the crystal structure indicates that the most important contributions to the crystal packing are from H⋯H (37.5%), H⋯C/C⋯H (24.6%) and H⋯O/O⋯H (16.7%) inter-actions. Hydrogen-bonding and van der Waals inter-actions are the dominant inter-actions in the crystal packing. Computational chemistry indicates that in the crystal, C-H⋯O hydrogen bond energies are 38.3 and 30.3 kJ mol. Density functional theory (DFT) optimized structures at the B3LYP/ 6-311 G(d,p) level are compared with the experimentally determined mol-ecular structure in the solid state. The HOMO-LUMO behaviour was elucidated to determine the energy gap. Moreover, the anti-bacterial activity of the title compound has been evaluated against gram-positive and gram-negative bacteria.

摘要

标题化合物CHClNOS由氯代苯基亚甲基和二氢苯并噻嗪单元与一个乙酸酯部分相连组成,其中噻嗪环呈螺旋船构象。在晶体中,两组弱的C-H⋯O(Ph = 苯基,Dbt = 二氢苯并噻嗪)氢键形成与 平面平行的分子层。这些层沿着 轴方向堆叠,酯链插入其中。所研究的晶体是一个双组分孪晶,其精制的BASF为0.34961 (5)。晶体结构的 Hirshfeld 表面分析表明,对晶体堆积最重要的贡献来自H⋯H(37.5%)、H⋯C/C⋯H(24.6%)和H⋯O/O⋯H(16.7%)相互作用。氢键和范德华相互作用是晶体堆积中的主要相互作用。计算化学表明,在晶体中,C-H⋯O氢键能为38.3和30.3 kJ mol。将密度泛函理论(DFT)在B3LYP/6-311 G(d,p)水平优化的结构与实验测定的固态分子结构进行了比较。阐明了HOMO-LUMO行为以确定能隙。此外,还评估了标题化合物对革兰氏阳性和革兰氏阴性细菌的抗菌活性。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/be5a/7199248/550891e67e50/e-76-00629-fig1.jpg

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