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(2)-2-(2,4-二氯亚苄基)-4-壬基-3,4-二氢-2H-1,4-苯并噻嗪-3-酮的晶体结构、 Hirshfeld表面分析、相互作用能及密度泛函理论研究

Crystal structure, Hirshfeld surface analysis, inter-action energy and DFT studies of (2)-2-(2,4-di-chloro-benzyl-idene)-4-nonyl-3,4-di-hydro-2-1,4-benzo-thia-zin-3-one.

作者信息

Hni Brahim, Sebbar Nada Kheira, Hökelek Tuncer, Redouane Achour, Mague Joel T, Hamou Ahabchane Noureddine, Essassi El Mokhtar

机构信息

Laboratoire de Chimie Organique Hétérocyclique URAC 21, Pôle de Compétence Pharmacochimie, Av. Ibn Battouta, BP 1014, Faculté des Sciences, Université Mohammed V, Rabat, Morocco.

Laboratoire de Chimie Appliquée et Environnement, Equipe de Chimie Bioorganique Appliquée, Faculté des Sciences, Université Ibn Zohr, Agadir, Morocco.

出版信息

Acta Crystallogr E Crystallogr Commun. 2020 Jan 31;76(Pt 2):281-287. doi: 10.1107/S2056989020001036. eCollection 2020 Feb 1.

DOI:10.1107/S2056989020001036
PMID:32071763
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7001846/
Abstract

The title compound, CHClNOS, contains 1,4-benzo-thia-zine and 2,4-di-chloro-phenyl-methyl-idene units in which the di-hydro-thia-zine ring adopts a screw-boat conformation. In the crystal, inter-molecular C-H⋯O (Bnz = benzene and Thz = thia-zine) hydrogen bonds form chains of mol-ecules extending along the -axis direction, which are connected to their inversion-related counterparts by C-H⋯Cl (Dchlphy = 2,4-di-chloro-phen-yl) hydrogen bonds and C-H⋯π (ring) inter-actions. These double chains are further linked by C-H⋯O hydrogen bonds, forming stepped layers approximately parallel to (012). The Hirshfeld surface analysis of the crystal structure indicates that the most important contributions for the crystal packing are from H⋯H (44.7%), C⋯H/H⋯C (23.7%), Cl⋯H/H⋯Cl (18.9%), O⋯H/H⋯O (5.0%) and S⋯H/H⋯S (4.8%) inter-actions. Hydrogen-bonding and van der Waals inter-actions are the dominant inter-actions in the crystal packing. Computational chemistry indicates that in the crystal, C-H⋯O, C-H⋯O and C-H⋯Cl hydrogen-bond energies are 134.3, 71.2 and 34.4 kJ mol, respectively. Density functional theory (DFT) optimized structures at the B3LYP/6-311 G(d,p) level are compared with the experimentally determined mol-ecular structure in the solid state. The HOMO-LUMO behaviour was elucidated to determine the energy gap. The two carbon atoms at the end of the nonyl chain are disordered in a 0.562 (4)/0.438 (4) ratio.

摘要

标题化合物CHClNOS包含1,4 - 苯并噻嗪和2,4 - 二氯苯基亚甲基单元,其中二氢噻嗪环呈螺旋船构象。在晶体中,分子间C - H⋯O(Bnz = 苯环,Thz = 噻嗪)氢键形成沿c轴方向延伸的分子链,这些分子链通过C - H⋯Cl(Dchlphy = 2,4 - 二氯苯基)氢键和C - H⋯π(环)相互作用与其反演相关的对应物相连。这些双链进一步通过C - H⋯O氢键连接,形成近似平行于(012)的阶梯状层。晶体结构的 Hirshfeld 表面分析表明,晶体堆积中最重要的贡献来自H⋯H(44.7%)、C⋯H/H⋯C(23.7%)、Cl⋯H/H⋯Cl(18.9%)、O⋯H/H⋯O(5.0%)和S⋯H/H⋯S(4.8%)相互作用。氢键和范德华相互作用是晶体堆积中的主要相互作用。计算化学表明,在晶体中,C - H⋯O、C - H⋯O和C - H⋯Cl氢键能分别为134.3、71.2和34.4 kJ mol。在B3LYP/6 - 311 G(d,p)水平上对密度泛函理论(DFT)优化的结构与固态下实验测定的分子结构进行了比较。阐明了HOMO - LUMO行为以确定能隙。壬基链末端的两个碳原子以0.562 (4)/0.438 (4)的比例无序排列。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/be34/7001846/79080d373374/e-76-00281-fig9.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/be34/7001846/c22a69be2aa0/e-76-00281-fig1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/be34/7001846/a8f7c24fa4a7/e-76-00281-fig2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/be34/7001846/9602fce88dff/e-76-00281-fig3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/be34/7001846/3e3ae1bc114b/e-76-00281-fig4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/be34/7001846/e2a7f648650f/e-76-00281-fig5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/be34/7001846/a2974b4ba420/e-76-00281-fig6.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/be34/7001846/4244889569e0/e-76-00281-fig7.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/be34/7001846/790ade18f0d7/e-76-00281-fig8.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/be34/7001846/79080d373374/e-76-00281-fig9.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/be34/7001846/c22a69be2aa0/e-76-00281-fig1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/be34/7001846/a8f7c24fa4a7/e-76-00281-fig2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/be34/7001846/9602fce88dff/e-76-00281-fig3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/be34/7001846/3e3ae1bc114b/e-76-00281-fig4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/be34/7001846/e2a7f648650f/e-76-00281-fig5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/be34/7001846/a2974b4ba420/e-76-00281-fig6.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/be34/7001846/4244889569e0/e-76-00281-fig7.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/be34/7001846/790ade18f0d7/e-76-00281-fig8.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/be34/7001846/79080d373374/e-76-00281-fig9.jpg

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