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肠道共生细菌“东乡红肉杆菌”的简化基因组为深入了解其在宿主昆虫生态和适应过程中的可能作用提供了线索。

Reduced Genome of the Gut Symbiotic Bacterium " Benitsuchiphilus tojoi" Provides Insight Into Its Possible Roles in Ecology and Adaptation of the Host Insect.

作者信息

Mondal Shakhinur Islam, Akter Arzuba, Koga Ryuichi, Hosokawa Takahiro, Dayi Mehmet, Murase Kazunori, Tanaka Ryusei, Shigenobu Shuji, Fukatsu Takema, Kikuchi Taisei

机构信息

Division of Parasitology, Faculty of Medicine, University of Miyazaki, Miyazaki, Japan.

Genetic Engineering and Biotechnology Department, Shahjalal University of Science and Technology, Sylhet, Bangladesh.

出版信息

Front Microbiol. 2020 May 6;11:840. doi: 10.3389/fmicb.2020.00840. eCollection 2020.

Abstract

Diverse animals, including insects, harbor microbial symbionts within their gut, body cavity, or cells. The subsocial parastrachiid stinkbug is well-known for its peculiar ecological and behavioral traits, including its prolonged non-feeding diapause period and maternal care of eggs/nymphs in an underground nest. harbors a specific bacterial symbiont within the gut cavity extracellularly, which is vertically inherited through maternal excretion of symbiont-containing white mucus. Thus far, biological roles of the symbiont in the host lifecycle has been little understood. Here we sequenced the genome of the uncultivable gut symbiont " Benitsuchiphilus tojoi." The symbiont has an 804 kb circular chromosome encoding 606 proteins and a 14.5 kb plasmid encoding 13 proteins. Phylogenetic analysis indicated that the bacterium is closely related to other obligate insect symbionts belonging to the Gammaproteobacteria, including of aphids and of ants, and the most closely related to , an extracellular gut symbiont of plataspid stinkbugs. These data suggested that the symbiont genome has evolved like highly reduced gamma-proteobacterial symbiont genomes reported from a variety of insects. The presence of genes involved in biosynthesis pathways for amino acids, vitamins, and cofactors in the genome implicated the symbiont as a nutritional mutualist, supplementing essential nutrients to the host. Interestingly, the symbiont's plasmid encoded genes for thiamine and carotenoid synthesis pathways, suggesting the possibility of additional functions of the symbiont for protecting the host against oxidative stress and DNA damage. Finally, possible involvement of the symbiont in uric acid metabolism during diapause is discussed.

摘要

包括昆虫在内的多种动物,其肠道、体腔或细胞内都含有微生物共生体。亚社会性的副蝽科椿象以其独特的生态和行为特征而闻名,包括其延长的非取食滞育期以及在地下巢穴中对卵/若虫的母性照料。它在肠道腔内细胞外含有一种特定的细菌共生体,这种共生体通过母体分泌含共生体的白色黏液进行垂直遗传。到目前为止,共生体在宿主生命周期中的生物学作用还知之甚少。在这里,我们对不可培养的肠道共生体“东乡红肉椿象嗜菌”的基因组进行了测序。该共生体有一个804 kb的环状染色体,编码606种蛋白质,还有一个14.5 kb的质粒,编码13种蛋白质。系统发育分析表明,这种细菌与属于γ-变形菌纲的其他专性昆虫共生体密切相关,包括蚜虫和蚂蚁的共生体,与扁盾蝽的细胞外肠道共生体关系最为密切。这些数据表明,该共生体的基因组进化方式与从多种昆虫中报道的高度简化的γ-变形菌共生体基因组相似。基因组中存在参与氨基酸、维生素和辅因子生物合成途径的基因,这表明该共生体是一种营养共生体,为宿主补充必需营养。有趣的是,共生体的质粒编码了硫胺素和类胡萝卜素合成途径的基因,这表明共生体可能具有额外的功能,以保护宿主免受氧化应激和DNA损伤。最后,讨论了共生体在滞育期间可能参与尿酸代谢的情况。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/324a/7218078/b50444072240/fmicb-11-00840-g001.jpg

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