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改进具有易感-感染-易感动力学的网络模型的成对近似。

Improving pairwise approximations for network models with susceptible-infected-susceptible dynamics.

作者信息

Leng Trystan, Keeling Matt J

机构信息

EPSRC & MRC Centre for Doctoral Training in Mathematics for Real-World Systems, University of Warwick, United Kingdom.

Zeeman Institute for Systems Biology and Infectious Disease Epidemiology Research, Mathematics Institute and School of Life Sciences, University of Warwick, United Kingdom.

出版信息

J Theor Biol. 2020 Sep 7;500:110328. doi: 10.1016/j.jtbi.2020.110328. Epub 2020 May 23.

DOI:10.1016/j.jtbi.2020.110328
PMID:32454058
Abstract

Network models of disease spread play an important role in elucidating the impact of long-lasting infectious contacts on the dynamics of epidemics. Moment-closure approximation is a common method of generating low-dimensional deterministic models of epidemics on networks, which has found particular success for diseases with susceptible-infected-recovered (SIR) dynamics. However, the effect of network structure is arguably more important for sexually transmitted infections, where epidemiologically relevant contacts are comparatively rare and longstanding, and which are in general modelled via the susceptible-infected-susceptible (SIS)-paradigm. In this paper, we introduce an improvement to the standard pairwise approximation for network models with SIS-dynamics for two different network structures: the isolated open triple (three connected individuals in a line) and the k-regular network. This improvement is achieved by tracking the rate of change of errors between triple values and their standard pairwise approximation. For the isolated open triple, this improved pairwise model is exact, while for k-regular networks a closure is made at the level of triples to obtain a closed set of equations. This improved pairwise approximation provides an insight into the errors introduced by the standard pairwise approximation, and more closely matches both higher-order moment-closure approximations and explicit stochastic simulations with only a modest increase in dimensionality to the standard pairwise approximation.

摘要

疾病传播的网络模型在阐明持久感染接触对流行病动态的影响方面发挥着重要作用。矩封闭近似是一种生成网络上流行病低维确定性模型的常用方法,对于具有易感-感染-康复(SIR)动态的疾病,该方法已取得了特别的成功。然而,对于性传播感染而言,网络结构的影响可能更为重要,因为在性传播感染中,流行病学上相关的接触相对较少且持续时间长,并且一般通过易感-感染-易感(SIS)范式进行建模。在本文中,我们针对具有SIS动态的两种不同网络结构:孤立开放三元组(三个个体呈直线相连)和k正则网络,对网络模型的标准成对近似进行了改进。这种改进是通过跟踪三元组值与其标准成对近似之间误差的变化率来实现的。对于孤立开放三元组,这种改进的成对模型是精确的,而对于k正则网络,则在三元组层面进行封闭以获得一组封闭的方程。这种改进的成对近似揭示了标准成对近似引入的误差,并且在维度仅比标准成对近似适度增加的情况下,更紧密地匹配了高阶矩封闭近似和显式随机模拟。

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