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[一个中国家族性肺结节病家系的全外显子组测序与分析]

[Whole exome sequencing and analysis of a Chinese family with familial pulmonary sarcoidosis].

作者信息

Zhang Q, Huang H, Wang N, Fang C L, Jing X Y, Guo J, Sun W, Yu C, Yang X Y, Xu Z J

机构信息

Department of Pulmonary Medicine, Peking Union Medical College Hospital, Peking Union Medical College, Chinese Academy of Medical Sciences, Beijing 100730, China.

出版信息

Zhonghua Jie He He Hu Xi Za Zhi. 2020 Jun 12;43(6):525-531. doi: 10.3760/cma.j.cn112147-20191114-00759.

Abstract

To analyze the clinical features and the results of the whole exome sequencing (WES) of a Chinese family containing both pulmonary sarcoidosis patients and healthy members, and to find potent genes and variants that may be involved in the pathogenesis of sarcoidosis. Three patients with pulmonary sarcoidosis and 1 healthy member was included from a Chinese Han family in the north of China diagnosed in November 2016, which characterized as 2 consecutive generations including 2 males and 1 female, aged from 23 to 69 years old. The proband is Ⅱ-6. Pulmonary sarcoidosis was diagnosed by clinical features, imaging and pathological findings, and clinical data such as family history were collected. Whole blood samples were taken and WES (Illumina NovaSeq S2) was performed. The pathogenicity analysis and gene annotation analysis were performed by ExAC, SIFT, Polyphenv2, Metascape databases. It was found that 27 genes were highly pathogenic in the database filtering result. After gene annotation analysis, we found that ZC3H12A gene can negatively regulate the differentiation of Th17 cells, which may be involved in the onset of pulmonary sarcoidosis. Sanger sequencing confirmed the c.1361 A>G variant in 3 sarcoidosis patients but normal in healthy member. In patients with familial pulmonary sarcoidosis, the genetic background could regulate immune response which is one of the pathogenic mechanisms of sarcoidosis. The whole exome test and gene ontology analysis showed that Ⅱ-2, Ⅱ-6 and Ⅲ-1 pulmonary sarcoidosis patients in this family were all shared the same variant on ZC3H12A gene, which played a pivotal role in differentiation of Th17 cells and is a potent pathogenesis gene in this Chinese pulmonary sarcoidosis family.

摘要

分析一个包含肺结节病患者和健康成员的中国家庭的临床特征及全外显子组测序(WES)结果,以寻找可能参与结节病发病机制的潜在基因和变异。2016年11月诊断的一个中国北方汉族家庭中纳入了3例肺结节病患者和1名健康成员,该家庭连续两代人,包括2名男性和1名女性,年龄在23至69岁之间。先证者为Ⅱ-6。通过临床特征、影像学和病理结果诊断肺结节病,并收集家族史等临床资料。采集全血样本并进行WES(Illumina NovaSeq S2)。通过ExAC、SIFT、Polyphenv2、Metascape数据库进行致病性分析和基因注释分析。在数据库筛选结果中发现27个基因具有高度致病性。经过基因注释分析,发现ZC 3H12A基因可负向调节Th17细胞分化,可能参与肺结节病的发病。Sanger测序证实3例结节病患者存在c.1361 A>G变异,而健康成员正常。在家族性肺结节病患者中,遗传背景可调节免疫反应,这是结节病的致病机制之一。全外显子检测和基因本体分析表明,该家庭中的Ⅱ-2、Ⅱ-6和Ⅲ-1肺结节病患者在ZC 3H12A基因上均存在相同变异,该变异在Th17细胞分化中起关键作用,是这个中国肺结节病家庭中的一个重要致病基因。

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