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巴西队列和编码药物代谢酶和药物转运体的基因。

Brazilian cohort and genes encoding for drug-metabolizing enzymes and drug transporters.

机构信息

Division of Clinical Gastroenterology & Hepatology, Department of Gastroenterology, Faculdade de Medicina, Universidade de São Paulo, São Paulo, 05403-000, Brazil.

Division of Liver Diseases, Department of Medicine, Liver Cancer Program, Tisch Cancer Institute, Graduate School of Biomedical Sciences, Icahn School of Medicine at Mount Sinai, NY 10029, USA.

出版信息

Pharmacogenomics. 2020 Jun;21(9):575-586. doi: 10.2217/pgs-2020-0013. Epub 2020 Jun 3.

Abstract

Genetic variability in drug absorption, distribution, metabolism and excretion (ADME) genes contributes to the high heterogeneity of drug responses. The present study investigated polymorphisms of ADME genes frequencies and compared the findings with populations from other continents, available in the 1000 Genome Project (1 KGP) and the Exome Aggregation Consortium (ExAC) databases.  We conducted a study of 100 patients in Brazil and a total of 2003 SNPs were evaluated by targeted next-generation sequencing in 148 genes, including Phase I enzymes (n = 50), Phase II enzymes (n = 38) and drug transporters (n = 60). Overall, the distribution of minor allele frequency (MAF) suggests that the distribution of 2003 SNPs is similar between Brazilian cohort, 1 KGP and ExAC; however, we found moderate SNP allele-frequency divergence between Brazilian cohort and both 1000 KGP and ExAC. These differences were observed in several relevant genes including , and .  We concluded that the Brazilian population needs clinical assessment of drug treatment based on individual genotype rather than ethnicity.

摘要

药物吸收、分布、代谢和排泄(ADME)基因的遗传变异性导致了药物反应的高度异质性。本研究调查了 ADME 基因多态性的频率,并将研究结果与 1000 基因组计划(1KGP)和外显子聚集联盟(ExAC)数据库中来自其他大陆的人群进行了比较。我们在巴西进行了一项 100 例患者的研究,通过靶向下一代测序对 148 个基因中的 2003 个 SNP 进行了评估,包括 I 相酶(n=50)、II 相酶(n=38)和药物转运体(n=60)。总体而言,次要等位基因频率(MAF)的分布表明,巴西队列、1KGP 和 ExAC 之间 2003 个 SNP 的分布相似;然而,我们发现巴西队列与 1000KGP 和 ExAC 之间存在中等程度的 SNP 等位基因频率差异。这些差异在几个相关基因中观察到,包括、和。我们得出结论,巴西人群需要根据个体基因型而不是种族进行药物治疗的临床评估。

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