Department of Medical Biology, Faculty of Health Sciences, UiT-The Arctic University of Norway, 9037 Tromsø, Norway.
Int J Mol Sci. 2020 Jun 12;21(12):4205. doi: 10.3390/ijms21124205.
Previous studies have shown that THP-1 cells produced an SDS-stable and reduction-sensitive complex between proMMP-9 and a chondroitin sulfate proteoglycan (CSPG) core protein. The complex could be reconstituted in vitro using purified serglycin (SG) and proMMP-9 and contained no inter-disulfide bridges. It was suggested that the complex involved both the FnII module and HPX domain of proMMP-9. The aims of the present study were to resolve the interacting regions of the molecules that form the complex and the types of interactions involved. In order to study this, we expressed and purified full-length and deletion variants of proMMP-9, purified CSPG and SG, and performed in vitro reconstitution assays, peptide arrays, protein modelling, docking, and molecular dynamics (MD) simulations. ProMMP-9 variants lacking both the FnII module and the HPX domain did not form the proMMP-9∙CSPG/SG complex. Deletion variants containing at least the FnII module or the HPX domain formed the proMMP-9∙CSPG/SG complex, as did the SG core protein without CS chains. The interacting parts covered large surface areas of both molecules and implicated dynamic and complementary ionic, hydrophobic, and hydrogen bond interactions. Hence, no short single interacting linear motifs in the two macromolecules could explain the strong SDS-stable and reduction-sensitive binding.
先前的研究表明,THP-1 细胞在脯氨酰基质金属蛋白酶-9(proMMP-9)和软骨素硫酸盐蛋白聚糖(CSPG)核心蛋白之间产生了一种 SDS 稳定且还原敏感的复合物。该复合物可使用纯化的神经丝氨酸蛋白酶抑制剂(SG)和 proMMP-9 在体外重新构成,并且不包含任何二硫键桥。有人认为,该复合物涉及 proMMP-9 的 FnII 模块和 HPX 结构域。本研究的目的是确定形成复合物的分子的相互作用区域以及涉及的相互作用类型。为了研究这一点,我们表达和纯化了全长和缺失变体的 proMMP-9、纯化的 CSPG 和 SG,并进行了体外重建测定、肽阵列、蛋白质建模、对接和分子动力学(MD)模拟。缺乏 FnII 模块和 HPX 结构域的 proMMP-9 变体不能形成 proMMP-9·CSPG/SG 复合物。至少包含 FnII 模块或 HPX 结构域的缺失变体形成了 proMMP-9·CSPG/SG 复合物,SG 核心蛋白没有 CS 链也形成了该复合物。相互作用部分覆盖了两个分子的大部分表面区域,并暗示了动态和互补的离子、疏水和氢键相互作用。因此,在这两个大分子中没有短的单一相互作用线性基序可以解释强 SDS 稳定且还原敏感的结合。