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系统分析胃癌中formin 样基因家族的表达及预后价值。

Systematic Characterization of the Expression and Prognostic Values of Formin-Like Gene Family in Gastric Cancer.

机构信息

Department of Gastroenterology and Wuxi People's Hospital Affiliated to Nanjing Medical University, Wuxi, China.

Department of Oncology, Wuxi People's Hospital Affiliated to Nanjing Medical University, Wuxi, China.

出版信息

DNA Cell Biol. 2020 Sep;39(9):1664-1677. doi: 10.1089/dna.2020.5508. Epub 2020 Jun 16.

Abstract

Formin-like genes (FMNLs) are members of formins family and have been implicated to the development and progression of multiple cancers. This research aims to analyze the expression profiles, prognostic values, and immune infiltrating associations of FMNLs in gastric cancer (GC) using multiple online bioinformatics website, including Oncomine, UALCAN, Kaplan-Meier Plotter, TIMER, GeneMANIA, DAVID, and LinkedOmics databases. The mRNA levels of FMNL1/2/3 were higher in GC tissues than normal. Meanwhile, FMNLs expressions tend to be upregulated in advanced and poorly differentiated GC. Prognostic value analysis suggested that high transcription levels of FMNL1/3 were associated with poor overall survival in GC patients. Correlation analysis between FMNLs expressions and immune infiltrating GC revealed that the expressions of FMNLs were significantly associated with immune infiltrating. Protein-protein interaction network and enrichment analysis of FMNLs in GC showed that FMNLs coexpressed genes mainly participated in organizing actin cytoskeleton through affecting small G proteins activity. Moreover, Gene Set Enrichment Analysis (GSEA) analysis uncovered FMNLs and their coexpressed genes was tightly associated with immune-related cellular functions. These findings demonstrate that FMNLs might play significant immunomodulatory roles in tumor immunity and could be novel therapeutic targets and potential prognostic biomarkers in GC.

摘要

formin 样基因 (FMNLs) 是formin 家族的成员,与多种癌症的发生和发展有关。本研究旨在通过 Oncomine、UALCAN、Kaplan-Meier Plotter、TIMER、GeneMANIA、DAVID 和 LinkedOmics 数据库等多个在线生物信息学网站分析 FMNLs 在胃癌 (GC) 中的表达谱、预后价值和免疫浸润相关性。FMNL1/2/3 的 mRNA 水平在 GC 组织中高于正常组织。同时,FMNLs 的表达在晚期和低分化 GC 中趋于上调。预后价值分析表明,FMNL1/3 的高转录水平与 GC 患者的总生存率差相关。FMNLs 表达与 GC 免疫浸润的相关性分析表明,FMNLs 的表达与免疫浸润显著相关。GC 中 FMNLs 的蛋白质-蛋白质相互作用网络和富集分析表明,FMNLs 共表达基因主要通过影响小 G 蛋白活性来参与肌动蛋白细胞骨架的组织。此外,基因集富集分析 (GSEA) 分析表明,FMNLs 及其共表达基因与免疫相关的细胞功能密切相关。这些发现表明,FMNLs 可能在肿瘤免疫中发挥重要的免疫调节作用,可作为 GC 的新型治疗靶点和潜在的预后生物标志物。

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