文献检索文档翻译深度研究
Suppr Zotero 插件Zotero 插件
邀请有礼套餐&价格历史记录

新学期,新优惠

限时优惠:9月1日-9月22日

30天高级会员仅需29元

1天体验卡首发特惠仅需5.99元

了解详情
不再提醒
插件&应用
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
高级版
套餐订阅购买积分包
AI 工具
文献检索文档翻译深度研究
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2025

A library of nucleotide analogues terminate RNA synthesis catalyzed by polymerases of coronaviruses that cause SARS and COVID-19.

作者信息

Jockusch Steffen, Tao Chuanjuan, Li Xiaoxu, Anderson Thomas K, Chien Minchen, Kumar Shiv, Russo James J, Kirchdoerfer Robert N, Ju Jingyue

机构信息

Center for Genome Technology and Biomolecular Engineering, Columbia University, New York, NY, 10027, USA; Department of Chemistry, Columbia University, New York, NY, 10027, USA.

Center for Genome Technology and Biomolecular Engineering, Columbia University, New York, NY, 10027, USA; Department of Chemical Engineering, Columbia University, New York, NY, 10027, USA.

出版信息

Antiviral Res. 2020 Aug;180:104857. doi: 10.1016/j.antiviral.2020.104857. Epub 2020 Jun 18.


DOI:10.1016/j.antiviral.2020.104857
PMID:32562705
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7299870/
Abstract

SARS-CoV-2, a member of the coronavirus family, is responsible for the current COVID-19 worldwide pandemic. We previously demonstrated that five nucleotide analogues inhibit the SARS-CoV-2 RNA-dependent RNA polymerase (RdRp), including the active triphosphate forms of Sofosbuvir, Alovudine, Zidovudine, Tenofovir alafenamide and Emtricitabine. We report here the evaluation of a library of nucleoside triphosphate analogues with a variety of structural and chemical features as inhibitors of the RdRps of SARS-CoV and SARS-CoV-2. These features include modifications on the sugar (2' or 3' modifications, carbocyclic, acyclic, or dideoxynucleotides) or on the base. The goal is to identify nucleotide analogues that not only terminate RNA synthesis catalyzed by these coronavirus RdRps, but also have the potential to resist the viruses' exonuclease activity. We examined these nucleotide analogues for their ability to be incorporated by the RdRps in the polymerase reaction and to prevent further incorporation. While all 11 molecules tested displayed incorporation, 6 exhibited immediate termination of the polymerase reaction (triphosphates of Carbovir, Ganciclovir, Stavudine and Entecavir; 3'-OMe-UTP and Biotin-16-dUTP), 2 showed delayed termination (Cidofovir diphosphate and 2'-OMe-UTP), and 3 did not terminate the polymerase reaction (2'-F-dUTP, 2'-NH-dUTP and Desthiobiotin-16-UTP). The coronaviruses possess an exonuclease that apparently requires a 2'-OH at the 3'-terminus of the growing RNA strand for proofreading. In this study, all nucleoside triphosphate analogues evaluated form Watson-Crick-like base pairs. The nucleotide analogues demonstrating termination either lack a 2'-OH, have a blocked 2'-OH, or show delayed termination. Thus, these nucleotide analogues are of interest for further investigation to evaluate whether they can evade the viral exonuclease activity. Prodrugs of five of these nucleotide analogues (Cidofovir, Abacavir, Valganciclovir/Ganciclovir, Stavudine and Entecavir) are FDA-approved medications for treatment of other viral infections, and their safety profiles are well established. After demonstrating potency in inhibiting viral replication in cell culture, candidate molecules can be rapidly evaluated as potential therapies for COVID-19.

摘要
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c1c2/7299870/b8eaff8e7509/gr5_lrg.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c1c2/7299870/aa7bcbb2ee12/gr1_lrg.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c1c2/7299870/cf67323e2eb7/gr2_lrg.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c1c2/7299870/62085d4b5e7e/gr3_lrg.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c1c2/7299870/55e871c0f566/gr4_lrg.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c1c2/7299870/b8eaff8e7509/gr5_lrg.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c1c2/7299870/aa7bcbb2ee12/gr1_lrg.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c1c2/7299870/cf67323e2eb7/gr2_lrg.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c1c2/7299870/62085d4b5e7e/gr3_lrg.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c1c2/7299870/55e871c0f566/gr4_lrg.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c1c2/7299870/b8eaff8e7509/gr5_lrg.jpg

相似文献

[1]
A library of nucleotide analogues terminate RNA synthesis catalyzed by polymerases of coronaviruses that cause SARS and COVID-19.

Antiviral Res. 2020-8

[2]
Nucleotide Analogues as Inhibitors of SARS-CoV-2 Polymerase, a Key Drug Target for COVID-19.

J Proteome Res. 2020-8-5

[3]
Nucleotide analogues as inhibitors of SARS-CoV Polymerase.

Pharmacol Res Perspect. 2020-12

[4]
Sofosbuvir terminated RNA is more resistant to SARS-CoV-2 proofreader than RNA terminated by Remdesivir.

Sci Rep. 2020-10-6

[5]
Remdesivir and SARS-CoV-2: Structural requirements at both nsp12 RdRp and nsp14 Exonuclease active-sites.

Antiviral Res. 2020-4-10

[6]
Sofosbuvir as a potential alternative to treat the SARS-CoV-2 epidemic.

Sci Rep. 2020-6-9

[7]
Remdesivir is a direct-acting antiviral that inhibits RNA-dependent RNA polymerase from severe acute respiratory syndrome coronavirus 2 with high potency.

J Biol Chem. 2020-4-13

[8]
Potential RNA-dependent RNA polymerase inhibitors as prospective therapeutics against SARS-CoV-2.

J Med Microbiol. 2020-5-29

[9]
Remdesivir triphosphate can efficiently inhibit the RNA-dependent RNA polymerase from various flaviviruses.

Antiviral Res. 2020-8-5

[10]
Rapid incorporation of Favipiravir by the fast and permissive viral RNA polymerase complex results in SARS-CoV-2 lethal mutagenesis.

Nat Commun. 2020-9-17

引用本文的文献

[1]
Patients with chronic hepatitis B under nucleos(t)ide analog therapy with Omicron BA.5 infection: A retrospective study in South China.

Liver Res. 2024-11-20

[2]
The Antiviral Efficacy and Safety of Azvudine in Hospitalized SARS-CoV-2 Infected Patients with Liver Diseases Based on a Multicenter, Retrospective Cohort Study.

Adv Sci (Weinh). 2025-4

[3]
Transcription Kinetics in the Coronavirus Life Cycle.

Wiley Interdiscip Rev RNA. 2025

[4]
Effect of SARS-CoV-2 infection on liver function in patients with hepatitis B.

BMC Infect Dis. 2024-12-18

[5]
Repurposing of lonafarnib as a treatment for SARS-CoV-2 infection.

JCI Insight. 2025-1-9

[6]
Studying the intersection of nucleoside modifications and SARS-CoV-2 RNA-dependent RNA transcription using an in vitro reconstituted system.

Methods Enzymol. 2024

[7]
Adenosine modifications impede SARS-CoV-2 RNA-dependent RNA transcription.

RNA. 2024-8-16

[8]
Effectiveness of Drug Repurposing and Natural Products Against SARS-CoV-2: A Comprehensive Review.

Clin Pharmacol. 2024-1-4

[9]
Chemoprophylactic Assessment of Combined Intranasal SARS-CoV-2 Polymerase and Exonuclease Inhibition in Syrian Golden Hamsters.

Viruses. 2023-10-27

[10]
Antiviral Effect of 5'-Arylchalcogeno-3-aminothymidine Derivatives in SARS-CoV-2 Infection.

Molecules. 2023-9-19

本文引用的文献

[1]
Nucleotide analogues as inhibitors of SARS-CoV Polymerase.

Pharmacol Res Perspect. 2020-12

[2]
Remdesivir is a direct-acting antiviral that inhibits RNA-dependent RNA polymerase from severe acute respiratory syndrome coronavirus 2 with high potency.

J Biol Chem. 2020-4-13

[3]
Remdesivir and SARS-CoV-2: Structural requirements at both nsp12 RdRp and nsp14 Exonuclease active-sites.

Antiviral Res. 2020-4-10

[4]
Structure of the RNA-dependent RNA polymerase from COVID-19 virus.

Science. 2020-4-10

[5]
An orally bioavailable broad-spectrum antiviral inhibits SARS-CoV-2 in human airway epithelial cell cultures and multiple coronaviruses in mice.

Sci Transl Med. 2020-4-6

[6]
Ribavirin, Remdesivir, Sofosbuvir, Galidesivir, and Tenofovir against SARS-CoV-2 RNA dependent RNA polymerase (RdRp): A molecular docking study.

Life Sci. 2020-3-25

[7]
The antiviral compound remdesivir potently inhibits RNA-dependent RNA polymerase from Middle East respiratory syndrome coronavirus.

J Biol Chem. 2020-2-24

[8]
A Novel Coronavirus from Patients with Pneumonia in China, 2019.

N Engl J Med. 2020-1-24

[9]
Small-Molecule Antiviral β-d--Hydroxycytidine Inhibits a Proofreading-Intact Coronavirus with a High Genetic Barrier to Resistance.

J Virol. 2019-11-26

[10]
Structure of the SARS-CoV nsp12 polymerase bound to nsp7 and nsp8 co-factors.

Nat Commun. 2019-5-28

文献AI研究员

20分钟写一篇综述,助力文献阅读效率提升50倍

立即体验

用中文搜PubMed

大模型驱动的PubMed中文搜索引擎

马上搜索

推荐工具

医学文档翻译智能文献检索