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通过口腔微生物群的下一代测序进行慢性鼻-鼻窦炎的临床检测

Clinical Detection of Chronic Rhinosinusitis through Next-Generation Sequencing of the Oral Microbiota.

作者信息

Yuan Ben-Chih, Yeh Yao-Tsung, Lin Ching-Chiang, Huang Cheng-Hsieh, Liu Hsueh-Chiao, Chiang Chih-Po

机构信息

Department of Otorhinolaryngology, Fooyin University Hospital, Pingtung 92849, Taiwan.

Department of Education and Research, Fooyin University Hospital, Pingtung 92849, Taiwan.

出版信息

Microorganisms. 2020 Jun 26;8(6):959. doi: 10.3390/microorganisms8060959.

Abstract

Chronic rhinosinusitis (CRS) is the chronic inflammation of the sinus cavities of the upper respiratory tract, which can be caused by a disrupted microbiome. However, the role of the oral microbiome in CRS is not well understood. Polymicrobial and anaerobic infections of CRS frequently increased the difficulty of cultured and antibiotic therapy. This study aimed to elucidate the patterns and clinical feasibility of the oral microbiome in CRS diagnosis. Matched saliva and nasal swabs were collected from 18 CRS patients and 37 saliva specimens from normal volunteers were collected for 16S rRNA sequencing. The α-diversity of the saliva displayed no significant difference between control and CRS patients, whereas the β-diversity was significantly different ( = 0.004). Taxonomic indices demonstrated that , , and were enriched, while and were reduced in the saliva of CRS patients. These microbial markers could significantly distinguish CRS patients from control (AUC = 0.939). It is noted that the 16S rRNA results of the nasal swab were consistent with the nasopharynx aerobic culture, and additionally detected multiple pathogens in CRS patients. In summary, these results indicated these oral microbiomes may provide a novel signal for CRS detection and that NGS may be an alternative approach for CRS diagnosis.

摘要

慢性鼻-鼻窦炎(CRS)是上呼吸道鼻窦腔的慢性炎症,可能由微生物群紊乱引起。然而,口腔微生物群在CRS中的作用尚未得到充分了解。CRS的多微生物和厌氧菌感染常常增加培养和抗生素治疗的难度。本研究旨在阐明口腔微生物群在CRS诊断中的模式和临床可行性。收集了18例CRS患者匹配的唾液和鼻拭子,并收集了37例正常志愿者的唾液标本进行16S rRNA测序。唾液的α多样性在对照组和CRS患者之间无显著差异,而β多样性有显著差异(P = 0.004)。分类学指标显示,CRS患者唾液中,梭杆菌属、纤毛菌属和普氏菌属富集,而放线菌属和韦荣球菌属减少。这些微生物标志物可显著区分CRS患者和对照组(AUC = 0.939)。值得注意的是,鼻拭子的16S rRNA结果与鼻咽需氧培养结果一致,并且在CRS患者中额外检测到多种病原体。总之,这些结果表明这些口腔微生物群可能为CRS检测提供新的信号,且二代测序(NGS)可能是CRS诊断的一种替代方法。

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