• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

扩展不饱和体系过渡态的AFIR探索:双峰过渡态的自动定位

AFIR explorations of transition states of extended unsaturated systems: automatic location of ambimodal transition states.

作者信息

Ito Takuma, Harabuchi Yu, Maeda Satoshi

机构信息

Graduate School of Chemical Sciences and Engineering, Hokkaido University, Sapporo 060-8628, Japan.

Department of Chemistry, Faculty of Science, Hokkaido University, Sapporo 060-0810, Japan.

出版信息

Phys Chem Chem Phys. 2020 Jul 1;22(25):13942-13950. doi: 10.1039/d0cp02379e.

DOI:10.1039/d0cp02379e
PMID:32609130
Abstract

Paths of Diels-Alder reactions between 2-vinylfuran and 3-methoxycarbonylcyclopentadienone were systematically explored by the multicomponent version of the artificial force induced reaction (MC-AFIR) method. In this reaction, the dynamical bifurcation in which a single transition state (TS) relates to two different products has been reported to occur [J. B. Thomas, et al., J. Am. Chem. Soc., 2008, 130, 14544-14555]. In this paper, based on the MC-AFIR method, we propose a procedure to systematically explore so called ambimodal TSs through which the dynamical bifurcation occurs. The present procedure finds candidates of TSs that may cause the dynamical bifurcation from the logs of an automated reaction path search by the MC-AFIR method, without any additional quantum chemical calculations. For this reaction, the MC-AFIR search found 125 unique TSs automatically. Among the 125 TSs, 19 were suggested as candidates, and finally, six including the one reported in the literature were confirmed to cause the dynamical bifurcation. The present procedure would be promising to find TSs involved in the dynamical bifurcation automatically.

摘要

采用人工力诱导反应多组分版本(MC - AFIR)方法系统地探索了2 - 乙烯基呋喃与3 - 甲氧基羰基环戊二烯酮之间的狄尔斯 - 阿尔德反应路径。在该反应中,据报道会发生一种单一过渡态(TS)与两种不同产物相关的动力学分支现象[J. B. Thomas等人,《美国化学会志》,2008年,130卷,14544 - 14555页]。在本文中,基于MC - AFIR方法,我们提出了一种系统探索所谓双峰过渡态的程序,动力学分支通过该过渡态发生。本程序从MC - AFIR方法自动反应路径搜索的日志中找到可能导致动力学分支的过渡态候选物,无需任何额外的量子化学计算。对于该反应,MC - AFIR搜索自动找到了125个独特的过渡态。在这其中125个过渡态中,可以确定有19个为候选过渡态,最后,包括文献中报道的一个在内,有六个被确认为会导致动力学分支。本程序有望自动找到涉及动力学分支的过渡态。

相似文献

1
AFIR explorations of transition states of extended unsaturated systems: automatic location of ambimodal transition states.扩展不饱和体系过渡态的AFIR探索:双峰过渡态的自动定位
Phys Chem Chem Phys. 2020 Jul 1;22(25):13942-13950. doi: 10.1039/d0cp02379e.
2
Computational Catalysis Using the Artificial Force Induced Reaction Method.使用人工力诱导反应方法的计算催化。
Acc Chem Res. 2016 Apr 19;49(4):763-73. doi: 10.1021/acs.accounts.6b00023. Epub 2016 Mar 29.
3
Exploring transition state structures for intramolecular pathways by the artificial force induced reaction method.通过人工力诱导反应方法探索分子内途径的过渡态结构。
J Comput Chem. 2014 Jan 15;35(2):166-73. doi: 10.1002/jcc.23481. Epub 2013 Nov 1.
4
Implementation and performance of the artificial force induced reaction method in the GRRM17 program.人工力诱发反应方法在 GRRM17 程序中的实现和性能。
J Comput Chem. 2018 Feb 5;39(4):233-251. doi: 10.1002/jcc.25106. Epub 2017 Nov 14.
5
Kinetic Analysis of a Reaction Path Network Including Ambimodal Transition States: A Case Study of an Intramolecular Diels-Alder Reaction.包含双峰过渡态的反应路径网络的动力学分析:分子内狄尔斯-阿尔德反应的案例研究。
J Chem Theory Comput. 2022 Mar 8;18(3):1663-1671. doi: 10.1021/acs.jctc.1c01297. Epub 2022 Jan 31.
6
Systematic exploration of the mechanism of chemical reactions: the global reaction route mapping (GRRM) strategy using the ADDF and AFIR methods.系统探索化学反应机制:使用 ADDF 和 AFIR 方法的全局反应路线映射 (GRRM) 策略。
Phys Chem Chem Phys. 2013 Mar 21;15(11):3683-701. doi: 10.1039/c3cp44063j.
7
Artificial Force Induced Reaction (AFIR) Method for Exploring Quantum Chemical Potential Energy Surfaces.用于探索量子化学势能面的人工力诱导反应(AFIR)方法
Chem Rec. 2016 Oct;16(5):2232-2248. doi: 10.1002/tcr.201600043. Epub 2016 Jun 3.
8
On Benchmarking of Automated Methods for Performing Exhaustive Reaction Path Search.关于穷尽反应路径搜索自动化方法的基准测试。
J Chem Theory Comput. 2019 Apr 9;15(4):2111-2115. doi: 10.1021/acs.jctc.8b01182. Epub 2019 Mar 18.
9
Exploring Downhill Bifurcations in [3,3]-Sigmatropic Rearrangement by Finding Transitions from an Uphill Bifurcation to a Downhill Bifurcation.通过寻找从向上分支到向下分支的转变来探索[3,3] - 迁移重排中的向下分支
J Chem Theory Comput. 2024 Mar 12;20(5):2049-2057. doi: 10.1021/acs.jctc.3c01383. Epub 2024 Feb 5.
10
Sampling of Transition States for Predicting Diastereoselectivity Using Automated Search Method-Aqueous Lanthanide-Catalyzed Mukaiyama Aldol Reaction.使用自动搜索方法预测非对映选择性的过渡态采样——水相镧系催化的 Mukaiyama 羟醛反应
J Chem Theory Comput. 2013 Jul 9;9(7):2882-6. doi: 10.1021/ct4002637. Epub 2013 Jun 25.

引用本文的文献

1
Chemoton 2.0: Autonomous Exploration of Chemical Reaction Networks.Chemoton 2.0:化学反应网络的自主探索
J Chem Theory Comput. 2022 Sep 13;18(9):5393-5409. doi: 10.1021/acs.jctc.2c00193. Epub 2022 Aug 4.
2
Reaction Space Projector (ReSPer) for Visualizing Dynamic Reaction Routes Based on Reduced-Dimension Space.用于基于降维空间可视化动态反应路径的反应空间投影仪(ReSPer)
Top Curr Chem (Cham). 2022 Mar 10;380(3):19. doi: 10.1007/s41061-022-00377-7.