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多值网络的双相似布尔化。

Bisimilar Booleanization of multivalued networks.

机构信息

IBISC - Paris-Saclay University, Univ. Evry, France.

出版信息

Biosystems. 2020 Nov;197:104205. doi: 10.1016/j.biosystems.2020.104205. Epub 2020 Jul 2.

Abstract

Discrete modelling frameworks of Biological networks can be divided in two distinct categories: Boolean and multivalued. Although multivalued networks are more expressive for qualifying the regulatory behaviours modelled by more than two values, the ability to automatically convert them to Boolean network with an equivalent behaviour breaks down the fundamental borders between the two approaches. Theoretically investigating the conversion process provides relevant insights into bridging the gap between them. Basically, the conversion aims at finding a Boolean network bisimulating a multivalued one. In this article, we investigate the bisimilar conversion where the Boolean integer coding is a parameter that can be freely modified. Based on this analysis, we define a computational method automatically inferring a bisimilar Boolean network from a given multivalued one.

摘要

生物网络的离散建模框架可以分为两类

布尔型和多值型。虽然多值网络对于描述超过两个值的调控行为更具表现力,但将其自动转换为具有等效行为的布尔网络的能力打破了这两种方法之间的基本界限。从理论上研究转换过程可以为弥合它们之间的差距提供相关的见解。基本上,转换的目的是找到一个可以模拟多值网络的布尔网络。在本文中,我们研究了这种双相似转换,其中布尔整数编码是一个可以自由修改的参数。基于此分析,我们定义了一种从给定的多值网络自动推断双相似布尔网络的计算方法。

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