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通过对不同分解阶段尸体口腔拭子中的 DNA 甲基化分析进行死后年龄估计——一项“原理验证”研究。

Postmortem age estimation via DNA methylation analysis in buccal swabs from corpses in different stages of decomposition-a "proof of principle" study.

机构信息

Institute of Legal Medicine, University Hospital Düsseldorf, 40225, Düsseldorf, Germany.

Helmholtz-Institute for Biomedical Engineering, Stem Cell Biology and Cellular Engineering, RWTH Aachen Faculty of Medicine, Aachen, Germany.

出版信息

Int J Legal Med. 2021 Jan;135(1):167-173. doi: 10.1007/s00414-020-02360-7. Epub 2020 Jul 7.

Abstract

Age estimation based on the analysis of DNA methylation patterns has become a focus of forensic research within the past few years. However, there is little data available regarding postmortem DNA methylation analysis yet, and literature mainly encompasses analysis of blood from corpses without any signs of decomposition. It is not entirely clear yet which other types of specimen are suitable for postmortem epigenetic age estimation, and if advanced decomposition may affect methylation patterns of CpG sites. In living persons, buccal swabs are an easily accessible source of DNA for epigenetic age estimation. In this work, the applicability of this approach (buccal swabs as source of DNA) under different postmortem conditions was tested. Methylation levels of PDE4C were investigated in buccal swab samples collected from 73 corpses (0-90 years old; mean: 51.2) in different stages of decomposition. Moreover, buccal swab samples from 142 living individuals (0-89 years old; mean 41.2) were analysed. As expected, methylation levels exhibited a high correlation with age in living individuals (training set: r = 0.87, validation set: r = 0.85). This was also the case in postmortem samples (r = 0.90), independent of the state of decomposition. Only in advanced putrified cases with extremely low DNA amounts, epigenetic age estimation was not possible. In conclusion, buccal swabs are a suitable and easy to collect source for DNA methylation analysis as long as sufficient amounts of DNA are present.

摘要

基于 DNA 甲基化模式分析的年龄估测在过去几年已成为法医学研究的焦点。然而,关于死后 DNA 甲基化分析的数据还很少,文献主要涵盖了对无任何分解迹象的尸体血液的分析。目前尚不清楚其他哪些类型的标本适合用于死后的表观遗传年龄估计,以及是否先进的分解会影响 CpG 位点的甲基化模式。在活体人中,口腔拭子是用于表观遗传年龄估计的一种易于获取的 DNA 来源。在这项工作中,测试了这种方法(口腔拭子作为 DNA 来源)在不同死后条件下的适用性。研究了从 73 具尸体(0-90 岁;平均年龄:51.2 岁)中收集的口腔拭子样本中 PDE4C 的甲基化水平,这些尸体处于不同的分解阶段。此外,还分析了来自 142 名活体个体(0-89 岁;平均年龄 41.2 岁)的口腔拭子样本。正如预期的那样,在活体个体中,甲基化水平与年龄呈高度相关性(训练集:r=0.87,验证集:r=0.85)。在死后样本中也是如此(r=0.90),与分解状态无关。只有在 DNA 数量极低的极度腐烂的情况下,才无法进行表观遗传年龄估计。总之,只要有足够的 DNA 存在,口腔拭子就是一种合适且易于采集的 DNA 甲基化分析来源。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/836b/7782454/218b090922a1/414_2020_2360_Fig1_HTML.jpg

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