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转座子测序在问号钩端螺旋体中的应用。

Transposon Sequencing in Leptospira interrogans.

机构信息

Department of Medicine, David Geffen School of Medicine at UCLA, Los Angeles, CA, USA.

Research Service, Veterans Affairs Greater Los Angeles Healthcare System, Los Angeles, CA, USA.

出版信息

Methods Mol Biol. 2020;2134:97-107. doi: 10.1007/978-1-0716-0459-5_9.

Abstract

Our limited understanding of the relationship of genotype to phenotype in the spirochete Leptospira interrogans stems from the inefficiency of the genetic tools available to manipulate the pathogen. The recent development of random transposon mutagenesis in L. interrogans has allowed the creation of large libraries of mutants, permitting the identification of several genes involved in certain functions such as virulence. However, the process of phenotypically screening individual mutants in the library remains time- and labor-intensive. Here, we describe a transposon sequencing technique (Tn-Seq), which combines random transposon mutagenesis with high-throughput sequencing for screening L. interrogans mutants more rapidly with fewer resources than traditional methods.

摘要

我们对螺旋体钩端螺旋体属基因型与表型关系的了解有限,这是因为可用的遗传工具在操纵病原体方面效率低下。最近在钩端螺旋体属中随机转座子诱变的发展允许创建大型突变体文库,从而鉴定出几个参与某些功能(如毒力)的基因。然而,在文库中对单个突变体进行表型筛选的过程仍然需要大量的时间和劳动力。在这里,我们描述了一种转座子测序技术(Tn-Seq),它将随机转座子诱变与高通量测序相结合,与传统方法相比,该技术可以更快地筛选钩端螺旋体属突变体,所需资源更少。

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