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葡萄糖-6-磷酸脱氢酶基因PCR引物设计及日粮碳水化合物水平对马来西亚马西亚胡鲇肝脏中该基因表达影响的数据。

Data on PCR primer design for glucose 6-phosphate dehydrogenase gene and the effects of dietary carbohydrate levels on its expression in the liver of Malaysian mahseer ().

作者信息

Ishak Sairatul Dahlianis, Razali Siti Aisyah, Kamarudin Mohd Salleh, Abol-Munafi Ambok Bolong

机构信息

Institute of Tropical Aquaculture and Fisheries, Universiti Malaysia Terengganu, 21030, Kuala Nerus, Terengganu, Malaysia.

Faculty of Science and Marine Environment, Universiti Malaysia Terengganu, 21030 Kuala Nerus, Terengganu, Malaysia.

出版信息

Data Brief. 2020 Jun 23;31:105916. doi: 10.1016/j.dib.2020.105916. eCollection 2020 Aug.

Abstract

The enzyme glucose-6-phosphate dehydrogenase (G6PD) catalyses the metabolite glucose-6-phosphate in producing NADPH during the first phase of pentose-phosphate pathway thus provides reducing power to all cells for cellular growth, antioxidant defence, and biosynthetic reactions in all living organism. The deliberate inclusion of starch as carbohydrate source in commercial feed however may affect the G6PD hepatic activity in cultured fish. We designed a set of primers to target G6PD gene in the popular Malaysian aquaculture species, For this dataset, the molecular characteristics of obtained G6PD () nucleotide sequence was analysed using multiple alignments and phylogenetic analyses of the deduced amino acids. The set of primers obtained were then used in a study to evaluate the effect of different dietary carbohydrate inclusion levels on the hepatic mRNA expression of the fingerlings. Four groups of fish were given a dietary treatment of 15%, 20%, 25% and 30% starch at the optimal inclusion level of 23.4% for 10 weeks. The mRNA transcripts were measured using real-time-PCR assays and its expression normalized against , which acts as the internal control gene. This article provides supportive data in relation between hepatic mRNA gene expression in and how it is influenced by its dietary carbohydrate intake. These data will also assist in further nutritional genomic studies of carbohydrate and energy utilization for all species in the mahseer family.

摘要

葡萄糖-6-磷酸脱氢酶(G6PD)催化代谢物葡萄糖-6-磷酸,在磷酸戊糖途径的第一阶段产生NADPH,从而为所有细胞提供还原力,以支持所有生物体的细胞生长、抗氧化防御和生物合成反应。然而,在商业饲料中刻意添加淀粉作为碳水化合物来源,可能会影响养殖鱼类肝脏中G6PD的活性。我们设计了一组引物,用于靶向马来西亚流行水产养殖品种中的G6PD基因。对于该数据集,通过对推导氨基酸进行多重比对和系统发育分析,分析了获得的G6PD核苷酸序列的分子特征。然后,将获得的引物组用于一项研究,以评估不同膳食碳水化合物添加水平对鱼种肝脏中G6PD mRNA表达的影响。四组鱼分别接受了15%、20%、25%和30%淀粉的膳食处理,最佳添加水平为23.4%,持续10周。使用实时PCR测定法测量mRNA转录本,并将其表达相对于作为内参基因的β-肌动蛋白进行标准化。本文提供了关于G6PD肝脏mRNA基因表达与其膳食碳水化合物摄入量之间关系的支持性数据。这些数据也将有助于进一步开展关于马西亚鱼科所有物种碳水化合物和能量利用的营养基因组学研究。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/eb94/7334360/89b838e51fc9/gr1.jpg

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