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钯催化C-H活化反应中选择性和反应性的计算机模拟合理化研究

In silico rationalisation of selectivity and reactivity in Pd-catalysed C-H activation reactions.

作者信息

Cao Liwei, Kabeshov Mikhail, Ley Steven V, Lapkin Alexei A

机构信息

Department of Chemical Engineering and Biotechnology, University of Cambridge, Cambridge CB3 0AS, UK.

Cambridge Centre for Advanced Research and Education in Singapore, CARES Ltd., CREATE Way, CREATE Tower #05-05, 138602 Singapore.

出版信息

Beilstein J Org Chem. 2020 Jun 25;16:1465-1475. doi: 10.3762/bjoc.16.122. eCollection 2020.

DOI:10.3762/bjoc.16.122
PMID:32647548
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7323619/
Abstract

A computational approach has been developed to automatically generate and analyse the structures of the intermediates of palladium-catalysed carbon-hydrogen (C-H) activation reactions as well as to predict the final products. Implemented as a high-performance computing cluster tool, it has been shown to correctly choose the mechanism and rationalise regioselectivity of chosen examples from open literature reports. The developed methodology is capable of predicting reactivity of various substrates by differentiation between two major mechanisms - proton abstraction and electrophilic aromatic substitution. An attempt has been made to predict new C-H activation reactions. This methodology can also be used for the automated reaction planning, as well as a starting point for microkinetic modelling.

摘要

已开发出一种计算方法,用于自动生成和分析钯催化的碳-氢(C-H)活化反应中间体的结构,并预测最终产物。作为一种高性能计算集群工具来实施,该方法已被证明能够正确选择反应机理,并对公开文献报道中所选实例的区域选择性作出合理说明。所开发的方法能够通过区分两种主要机理——质子提取和亲电芳香取代,来预测各种底物的反应活性。已尝试预测新的C-H活化反应。该方法还可用于自动反应规划,以及作为微动力学建模的起点。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fe13/7323619/02787d473667/Beilstein_J_Org_Chem-16-1465-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fe13/7323619/21e01028716b/Beilstein_J_Org_Chem-16-1465-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fe13/7323619/02787d473667/Beilstein_J_Org_Chem-16-1465-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fe13/7323619/21e01028716b/Beilstein_J_Org_Chem-16-1465-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fe13/7323619/02787d473667/Beilstein_J_Org_Chem-16-1465-g003.jpg

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本文引用的文献

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iScience. 2019 Oct 25;20:373-391. doi: 10.1016/j.isci.2019.09.035. Epub 2019 Sep 27.
2
A graph-convolutional neural network model for the prediction of chemical reactivity.一种用于预测化学反应性的图卷积神经网络模型。
Chem Sci. 2018 Nov 26;10(2):370-377. doi: 10.1039/c8sc04228d. eCollection 2019 Jan 14.
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Using Machine Learning To Predict Suitable Conditions for Organic Reactions.使用机器学习预测有机反应的合适条件。
ACS Cent Sci. 2018 Nov 28;4(11):1465-1476. doi: 10.1021/acscentsci.8b00357. Epub 2018 Nov 16.
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A Predictive Tool for Electrophilic Aromatic Substitutions Using Machine Learning.基于机器学习的亲电芳香取代反应预测工具。
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Palladium-catalyzed decarboxylative, decarbonylative and dehydrogenative C(sp)-H acylation at room temperature.钯催化的室温下脱羧、脱羰和脱氢的C(sp)-H酰化反应
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