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溶剂与链相互作用的平衡决定了模拟膜的局部应力状态。

Balance of Solvent and Chain Interactions Determines the Local Stress State of Simulated Membranes.

作者信息

Winkeljohn Conner M, Himberg Benjamin, Vanegas Juan M

机构信息

Department of Physics, University of Vermont, Burlington, Vermont 05405, United States.

Materials Science Graduate Program, University of Vermont, Burlington, Vermont 05405, United States.

出版信息

J Phys Chem B. 2020 Aug 13;124(32):6963-6971. doi: 10.1021/acs.jpcb.0c03937. Epub 2020 Aug 5.

Abstract

Characterization of the internal mechanical state of model lipid membranes is essential to understand the microscopic underpinnings of biological functions such as membrane fission and organelle shaping within the context of elastic theories such as the Helfrich framework. Here, we compute lateral stress or pressure profiles from molecular dynamics simulations of lipid bilayers and water-vacuum interfaces to understand the role that solvent treatment and force-field parametrization plays on the local mechanical features of membranes. We focus on two atomistic models, GROMOS 43A1-S3 and CHARMM36, and several variants of the MARTINI coarse-grained force-field, including the single-bead nonpolar water, three-point polarizable water, big multipole water, and solvent-free variants. Our results show that the various atomistic and coarse-grained force-fields produce contrasting lateral stress profiles as a result of the balance of solvent-solvent and solvent-solute forces at the hydrocarbon-water interface and fundamentally different treatment of pairwise (e.g., van der Waals, Coulomb, etc.) and multibody interactions (angles and torsions). Numerical integration of the second moment of the bilayer stress profiles indicates that different local distributions of repulsive and attractive stresses across the membrane, due to distinct force-field parametrizations, may result in substantial variations in macroscopic elastic properties.

摘要

在诸如赫尔弗里希框架等弹性理论的背景下,表征模型脂质膜的内部力学状态对于理解诸如膜裂变和细胞器塑形等生物学功能的微观基础至关重要。在此,我们通过脂质双层和水 - 真空界面的分子动力学模拟来计算横向应力或压力分布,以了解溶剂处理和力场参数化对膜的局部力学特征所起的作用。我们专注于两个原子模型,即GROMOS 43A1 - S3和CHARMM36,以及MARTINI粗粒化力场的几个变体,包括单珠非极性水、三点可极化水、大偶极水和无溶剂变体。我们的结果表明,由于烃 - 水界面处溶剂 - 溶剂和溶剂 - 溶质力的平衡以及对成对相互作用(例如范德华力、库仑力等)和多体相互作用(角度和扭转)的根本不同处理,各种原子模型和粗粒化力场产生了截然不同的横向应力分布。双层应力分布的二阶矩的数值积分表明,由于不同的力场参数化,膜上排斥和吸引应力的不同局部分布可能导致宏观弹性性质的显著变化。

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