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红海和东地中海的金线鱼属( spp.)的遗传多样性和系统进化关系。

Genetic diversity and phylogenetic relationships of threadfin breams ( spp.) from the Red Sea and eastern Mediterranean Sea.

机构信息

The American University in Cairo, P.O. Box 74, AUC Avenue 11835, Cairo, Egypt.

The American University in Beirut, P.O. Box 11-0236, Riad El-Solh / Beirut 1107 2020, Lebanon.

出版信息

Genome. 2021 Mar;64(3):207-216. doi: 10.1139/gen-2019-0163. Epub 2020 Jul 17.

Abstract

The present work utilized partial sequences of cytochrome oxidase subunit I (COI) to study Red Sea populations of threadfin breams (Nemipteridae), and compare their genetic diversity to that of Mediterranean Sea ( only) and Indo-Pacific populations. A Maximum Likelihood tree separated four fish species - , , , and - into four clades. Haplotype analyses revealed a strong case of the founder effect for the Lessepsian migrant : Three haplotypes represented all sampled geographical ranges in the Mediterranean Sea and only one haplotype was shared with a Red Sea individual, presenting evidence that the colonizing population was founded by a small number of migrants. The Red Sea population of shared haplotypes with Persian Gulf and Indian Ocean populations, but South China Sea populations remained fully isolated. The haplotype networks of and also revealed haplotype sharing between Red Sea and Indian Ocean populations. For , one haplotype was shared between Indonesia and the Persian Gulf. We discuss the impact of continued usage of public database sequences of initially misidentified organisms and provide recommendations for avoiding distribution of sequences with incorrect scientific names.

摘要

本研究利用细胞色素氧化酶亚基 I(COI)的部分序列,对红海的金线鱼科鱼类种群进行了研究,并将其遗传多样性与地中海(仅)和印度洋-太平洋种群进行了比较。最大似然树将四种鱼类——、、、和——分为四个分支。单倍型分析强烈表明,这种利西马普勒斯移民存在奠基者效应:在地中海的所有采样地理范围内,只有三种单倍型代表,只有一种单倍型与红海个体共享,这表明,殖民种群是由少数移民建立的。红海的种群与波斯湾和印度洋的种群共享单倍型,但南海的种群仍然完全隔离。和的单倍型网络也显示了红海和印度洋种群之间的单倍型共享。对于,在印度尼西亚和波斯湾之间共享了一种单倍型。我们讨论了继续使用最初被错误识别的生物体的公共数据库序列的影响,并提供了避免传播带有错误科学名称的序列的建议。

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