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糖尿病性白内障大鼠中tRNA衍生片段的鉴定及其潜在作用

Identification of tRNA-derived fragments and their potential roles in diabetic cataract rats.

作者信息

Han Xiaoyan, Cai Lei, Lu Yi, Li Dan, Yang Jin

机构信息

Department of Ophthalmology & the Eye Institute, Eye & Ear, Nose, & Throat Hospital, Fudan University, Shanghai 200031, PR China.

The Key Laboratory of Myopia, Ministry of Health, Shanghai 200031, PR China.

出版信息

Epigenomics. 2020 Aug;12(16):1405-1418. doi: 10.2217/epi-2020-0193. Epub 2020 Jul 23.

Abstract

To illustrate the expression profile of transfer RNA-derived fragments and reveal their putative role in the pathogenesis of diabetic cataract (DC) rats. Small RNA sequencing was conducted in the lens epithelium of rats lens. The data were validated by quantitative real-time PCR, and bioinformatic analysis was performed to explore the roles of the fragments in DC pathogenesis. A total of 213 differentially expressed tRNA-related fragments were identified, in which 111 were upregulated and 102 were downregulated in DC rats. Bioinformatics analysis revealed that several associated pathways might participate in the development of DC rats. tRNA-derived fragments may be involved in the pathogenesis of DC rats.

摘要

为阐明转运RNA衍生片段的表达谱,并揭示其在糖尿病性白内障(DC)大鼠发病机制中的潜在作用。对大鼠晶状体上皮进行了小RNA测序。通过定量实时PCR验证数据,并进行生物信息学分析以探讨这些片段在DC发病机制中的作用。共鉴定出213个差异表达的tRNA相关片段,其中111个在DC大鼠中上调,102个下调。生物信息学分析表明,几条相关通路可能参与DC大鼠的发病过程。tRNA衍生片段可能参与DC大鼠的发病机制。

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