Institute of Medical Genetics, University of Zurich, Schlieren-Zurich, Switzerland.
Department of Medical Oncology and Hematology, University Hospital Zurich, Comprehensive Cancer Center Zurich and University of Zurich, Zurich, Switzerland.
Mol Genet Genomic Med. 2020 Oct;8(10):e1409. doi: 10.1002/mgg3.1409. Epub 2020 Aug 3.
A minority of breast cancer (BC) patients suffer from severe reaction to adjuvant radiotherapy (RT). Although deficient DNA double-strand break repair is considered the main basis for the reactions, pretreatment identification of high-risk patients has been challenging.
To retrospectively determine the etiology of severe local reaction to RT in a 39-year-old woman with BC, we performed next-generation sequencing followed by further clinical and functional studies.
We found a -4 intronic variant (c.2251-4A>G) in trans with a synonymous (c.3576G>A) variant affecting the ATM DNA-repair gene (NG_009830.1, NM_000051.3) which is linked to autosomal recessive ataxia-telangiectasia (A-T). We verified abnormal transcripts resulting from both variants, next to a minor wild-type transcript leading to a residual ATM kinase activity and genomic instability. Follow-up examination of the patient revealed no classic sign of A-T but previously unnoticed head dystonia and mild dysarthria, a family history of BC and late-onset ataxia segregating with the variants. Additionally, her serum level of alpha-fetoprotein (AFP) was elevated similar to A-T patients.
Considering the variable presentations of A-T and devastating impact of severe reactions to RT, we suggest a routine measurement of AFP in RT-candidate BC patients followed by next-generation sequencing with special attention to non-canonical splice site and synonymous variants in ATM.
少数乳腺癌(BC)患者对辅助放疗(RT)有严重反应。尽管认为 DNA 双链断裂修复缺陷是反应的主要基础,但对高危患者的术前识别一直具有挑战性。
为了回顾性确定一名 39 岁 BC 女性对 RT 严重局部反应的病因,我们进行了下一代测序,然后进行了进一步的临床和功能研究。
我们发现 ATM 基因(NG_009830.1,NM_000051.3)的一个内含子 -4 变异(c.2251-4A>G)与同义变异(c.3576G>A)在 trans 中发生,该变异影响 DNA 修复基因,与常染色体隐性共济失调毛细血管扩张症(A-T)有关。我们验证了这两个变体导致的异常转录本,旁边是一个导致 ATM 激酶活性和基因组不稳定性残留的少量野生型转录本。对患者的随访检查未发现 A-T 的典型体征,但此前未注意到头位异常和轻度构音障碍、BC 家族史和与变体分离的迟发性共济失调。此外,她的血清甲胎蛋白(AFP)水平升高,类似于 A-T 患者。
考虑到 A-T 的多变表现和 RT 严重反应的破坏性影响,我们建议在 RT 候选 BC 患者中常规测量 AFP,然后进行下一代测序,特别注意 ATM 中的非典型剪接位点和同义变异。