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参与五种非生物胁迫的白三叶定量实时PCR参考基因的筛选与验证

Selection and Validation of Reference Genes for Quantitative Real-Time PCR in White Clover ( L.) Involved in Five Abiotic Stresses.

作者信息

Pu Qi, Li Zhou, Nie Gang, Zhou Jiqiong, Liu Lin, Peng Yan

机构信息

Department of Grassland Science, College of Animal Science and Technology, Sichuan Agricultural University, Chengdu 611130, China.

出版信息

Plants (Basel). 2020 Aug 5;9(8):996. doi: 10.3390/plants9080996.

Abstract

White clover ( L.) is a widely cultivated cool-season perennial forage legume in temperate grassland systems. Many studies have analyzed the gene expression in this grass species using quantitative real-time reverse transcription PCR (qRT-PCR). The selection of stable reference genes for qRT-PCR is crucial. However, there was no detailed study on reference genes in different tissues of white clover under various abiotic stress conditions. Herein, 14 candidate reference genes ( and ) were selected and analyzed by four programs (GeNorm, NormFinder, BestKeeper, and RefFinder). Samples were taken from two tissues (leaves and roots) under five different abiotic stresses (drought, salt, heat, cold, and heavy metal stress). Our results showed that and were the two top-ranked genes for all samples. Under various experimental conditions, the most stable gene was different; however, and were always top ranked. The most suitable reference genes should be selected according to different plant tissues and growth conditions. Validation of these reference genes by expression analysis of and confirmed their reliability. Our study will benefit the subsequent research of gene function in this species.

摘要

白三叶草(Trifolium repens L.)是温带草原系统中广泛种植的冷季多年生豆科牧草。许多研究使用定量实时逆转录PCR(qRT-PCR)分析了该草种中的基因表达。用于qRT-PCR的稳定内参基因的选择至关重要。然而,关于白三叶草在各种非生物胁迫条件下不同组织中的内参基因尚无详细研究。在此,选择了14个候选内参基因(......)并通过四个程序(GeNorm、NormFinder、BestKeeper和RefFinder)进行分析。样本取自两种组织(叶片和根),处于五种不同的非生物胁迫(干旱、盐、热、冷和重金属胁迫)下。我们的结果表明,......是所有样本中排名前两位的基因。在各种实验条件下,最稳定的基因不同;然而,......总是排名靠前。应根据不同的植物组织和生长条件选择最合适的内参基因。通过......的表达分析对这些内参基因进行验证,证实了它们的可靠性。我们的研究将有助于该物种后续的基因功能研究。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/af36/7463471/2d569c67eab6/plants-09-00996-g001.jpg

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