Khanal Pukar, Patil B M, Chand Jagdish, Naaz Yasmin
Department of Pharmacology and Toxicology, KLE College of Pharmacy, Belagavi, KLE Academy of Higher Education and Research (KAHER), Belagavi, 590010, India.
Department of Pharmaceutical Chemistry, KLE College of Pharmacy, Belagavi, KLE Academy of Higher Education and Research (KAHER), Belagavi, 590010, India.
Nat Prod Bioprospect. 2020 Oct;10(5):325-335. doi: 10.1007/s13659-020-00260-2. Epub 2020 Aug 8.
Anthraquinone derivatives are identified for their immune-boosting, anti-inflammatory, and anti-viral efficacy. Hence, the present study aimed to investigate the reported anthraquinone derivatives as immune booster molecules in COVID-19 infection and evaluate their binding affinity with three reported targets of novel coronavirus i.e. 3C-like protease, papain-like protease, and spike protein. The reported anthraquinone derivatives were retrieved from an open-source database and filtered based on a positive druglikeness score. Compounds with positive druglikeness scores were predicted for their targets using DIGEP-Pred and the interaction among modulated proteins was evaluated using STRING. Further, the associated pathways were recorded concerning the Kyoto Encyclopedia of Genes and Genomes pathway database. Finally, the docking was performed using autodock4 to identify the binding efficacy of anthraquinone derivatives with 3C-like protease, papain-like protease, and spike protein. After docking the pose of ligand scoring minimum binding energy was chosen to visualize the ligand-protein interaction. Among 101 bioactives, 36 scored positive druglikeness score and regulated multiple pathways concerned with immune modulation and (non-) infectious diseases. Similarly, docking study revealed torososide B to possess the highest binding affinity with papain-like protease and 3C-like protease and 1,3,6-trihydroxy-2-methyl-9,10-anthraquinone-3-O-(6'-O-acetyl)-β-D-xylopyranosyl-(1 → 2)-β-D-glucopyranoside with spike protein.
蒽醌衍生物因其免疫增强、抗炎和抗病毒功效而被鉴定出来。因此,本研究旨在研究已报道的蒽醌衍生物作为新冠病毒感染中的免疫增强分子,并评估它们与新型冠状病毒的三个已报道靶点即3C样蛋白酶、木瓜样蛋白酶和刺突蛋白的结合亲和力。从开源数据库中检索已报道的蒽醌衍生物,并根据阳性类药性质评分进行筛选。使用DIGEP-Pred预测具有阳性类药性质评分的化合物的靶点,并使用STRING评估调节蛋白之间的相互作用。此外,根据京都基因与基因组百科全书通路数据库记录相关通路。最后,使用autodock4进行对接,以确定蒽醌衍生物与3C样蛋白酶、木瓜样蛋白酶和刺突蛋白的结合效果。对接后,选择具有最小结合能评分的配体构象来可视化配体-蛋白相互作用。在101种生物活性物质中,36种具有阳性类药性质评分,并调节了与免疫调节和(非)感染性疾病相关的多种通路。同样,对接研究表明,托罗索苷B与木瓜样蛋白酶和3C样蛋白酶具有最高的结合亲和力,而1,3,6-三羟基-2-甲基-9,10-蒽醌-3-O-(6'-O-乙酰基)-β-D-吡喃木糖基-(1→2)-β-D-吡喃葡萄糖苷与刺突蛋白具有最高的结合亲和力。